Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   U5897_RS04220 Genome accession   NZ_CP142393
Coordinates   856355..856870 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain 38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 851355..861870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5897_RS04200 (U5897_04200) - 851717..853177 (+) 1461 WP_000004971.1 amino acid permease -
  U5897_RS04205 (U5897_04205) - 853454..854659 (+) 1206 WP_000512698.1 RtcB family protein -
  U5897_RS04210 (U5897_04210) - 854678..854821 (+) 144 WP_171289830.1 hypothetical protein -
  U5897_RS04215 (U5897_04215) omp38 854946..855974 (-) 1029 WP_000777889.1 outer membrane protein Omp38 -
  U5897_RS04220 (U5897_04220) fimT 856355..856870 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  U5897_RS04225 (U5897_04225) - 856979..858154 (+) 1176 WP_000129969.1 thiolase family protein -
  U5897_RS04230 (U5897_04230) - 858281..858724 (+) 444 WP_001176580.1 VOC family protein -
  U5897_RS04235 (U5897_04235) - 858767..859120 (-) 354 WP_000457779.1 DMT family transporter -
  U5897_RS04240 (U5897_04240) - 859202..859687 (-) 486 WP_000935248.1 DUF934 domain-containing protein -
  U5897_RS04245 (U5897_04245) - 859680..861323 (-) 1644 WP_094850290.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=841034 U5897_RS04220 WP_000477151.1 856355..856870(+) (fimT) [Acinetobacter baumannii strain 38]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=841034 U5897_RS04220 WP_000477151.1 856355..856870(+) (fimT) [Acinetobacter baumannii strain 38]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427