Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QP019_RS03550 Genome accession   NZ_CP126978
Coordinates   696704..697657 (+) Length   317 a.a.
NCBI ID   WP_285097057.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 691704..702657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS03525 (QP019_03525) - 692191..693132 (+) 942 WP_013745084.1 ABC transporter ATP-binding protein -
  QP019_RS03530 (QP019_03530) - 693133..693903 (+) 771 WP_013745083.1 ABC transporter permease -
  QP019_RS03535 (QP019_03535) modB 693929..694645 (+) 717 WP_039080841.1 molybdate ABC transporter permease subunit -
  QP019_RS03540 (QP019_03540) modC 694638..695693 (+) 1056 WP_285096700.1 molybdenum ABC transporter ATP-binding protein -
  QP019_RS03545 (QP019_03545) modA 695738..696496 (+) 759 WP_285096702.1 molybdate ABC transporter substrate-binding protein -
  QP019_RS03550 (QP019_03550) ceuB 696704..697657 (+) 954 WP_285097057.1 ABC transporter permease Machinery gene
  QP019_RS03555 (QP019_03555) - 697650..698615 (+) 966 WP_285096703.1 iron chelate uptake ABC transporter family permease subunit -
  QP019_RS03560 (QP019_03560) - 698606..699367 (+) 762 WP_013745077.1 ATP-binding cassette domain-containing protein -
  QP019_RS03565 (QP019_03565) - 699398..700306 (+) 909 WP_039147919.1 ABC transporter substrate-binding protein -
  QP019_RS03570 (QP019_03570) - 700421..702343 (+) 1923 WP_285096704.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34718.75 Da        Isoelectric Point: 8.9889

>NTDB_id=840980 QP019_RS03550 WP_285097057.1 696704..697657(+) (ceuB) [Gallibacterium anatis strain YJ922]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGTMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMTLLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTILFAYIYAQRFSIIGMGEEFATNLGLNYKQVLYLGLAIVSIVSSIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSHTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=840980 QP019_RS03550 WP_285097057.1 696704..697657(+) (ceuB) [Gallibacterium anatis strain YJ922]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCGGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCCGTTTC
TATCAGCGGTTTACTACAATTTGATGCCGAACAGTGGCAAATTTTATTGATTAGTCGTATTCCTCGTTTAGTGAGCATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCACCAACCACC
GCCGGAACGATGGATTGTGCGCGATTAGGCGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCTGCATTTGCCGGTTCATTATTATTTATGACTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACCGCTTTTATCGCCTATCAACAAGACCTA
TTACAAAATTTATCTGCTTGGTTACAAGGTGATTTTTCTTTGATTATGAGTGGAAGATATGAAATGCTTTATATCAGCAT
ACCAACAATATTATTTGCTTATATTTATGCACAACGTTTTTCCATTATTGGAATGGGAGAAGAATTTGCCACTAATCTAG
GATTAAATTATAAACAGGTACTTTATTTAGGGTTGGCTATTGTTTCTATTGTATCGTCAATTGTTATTGTTACCGTAGGA
GTCATTCCTTTTTTAGGATTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAATTTACGCAATACTTTGTCGCA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGACGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCCGTAGTTGGCGTTTTTGGTAGTGCTATTTTCCTCTATTTATTGTTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.074

97.476

0.517