Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QP020_RS03115 Genome accession   NZ_CP126977
Coordinates   651626..652579 (+) Length   317 a.a.
NCBI ID   WP_026210961.1    Uniprot ID   -
Organism   Gallibacterium anatis strain DFSO2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 646626..657579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS03090 (QP020_03090) - 647113..648054 (+) 942 WP_013745084.1 ABC transporter ATP-binding protein -
  QP020_RS03095 (QP020_03095) - 648055..648825 (+) 771 WP_013745083.1 ABC transporter permease -
  QP020_RS03100 (QP020_03100) modB 648851..649567 (+) 717 WP_039083847.1 molybdate ABC transporter permease subunit -
  QP020_RS03105 (QP020_03105) modC 649560..650615 (+) 1056 WP_039080840.1 molybdenum ABC transporter ATP-binding protein -
  QP020_RS03110 (QP020_03110) modA 650660..651418 (+) 759 WP_039153506.1 molybdate ABC transporter substrate-binding protein -
  QP020_RS03115 (QP020_03115) ceuB 651626..652579 (+) 954 WP_026210961.1 ABC transporter permease Machinery gene
  QP020_RS03120 (QP020_03120) - 652572..653537 (+) 966 WP_039086350.1 iron chelate uptake ABC transporter family permease subunit -
  QP020_RS03125 (QP020_03125) - 653528..654289 (+) 762 WP_285098870.1 ATP-binding cassette domain-containing protein -
  QP020_RS03130 (QP020_03130) - 654320..655228 (+) 909 WP_039147919.1 ABC transporter substrate-binding protein -
  QP020_RS03135 (QP020_03135) - 655343..657265 (+) 1923 WP_285098873.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34688.73 Da        Isoelectric Point: 8.9889

>NTDB_id=840960 QP020_RS03115 WP_026210961.1 651626..652579(+) (ceuB) [Gallibacterium anatis strain DFSO2]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGTMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMTLLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTLLFAYIYAQRFSIVGMGEEFATNLGLNYKQVLYLGLAIVSIVSAIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSHTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=840960 QP020_RS03115 WP_026210961.1 651626..652579(+) (ceuB) [Gallibacterium anatis strain DFSO2]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCAGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCCGTTTC
TATCAGCGGTTTACTACAATTTGATGCCGAACAGTGGCAAATTTTATTGATCAGCCGTATTCCTCGTTTAGTGAGCATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCACCAACCACC
GCCGGAACGATGGATTGTGCGCGATTAGGCGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCTGCATTTGCCGGTTCATTATTATTTATGACTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACCGCTTTTATCGCCTATCAACAAGATTTA
TTACAAAATTTATCTGCTTGGTTGCAAGGCGATTTTTCGCTCATTATGAGTGGACGCTATGAGATGCTTTATATCAGCAT
CCCAACATTATTATTTGCATATATTTATGCGCAACGTTTTTCTATTGTCGGGATGGGAGAAGAATTTGCCACCAACTTAG
GATTAAATTATAAGCAGGTACTTTATTTAGGACTAGCCATTGTTTCGATTGTGTCCGCCATTGTTATTGTTACCGTAGGA
GTCATTCCTTTTTTAGGATTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAATTTACGCAATACTTTGTCGCA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGACGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCCGTAGTTGGCGTTTTTGGTAGTGCTATTTTCCTCTATTTATTGTTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.074

97.476

0.517