Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QP018_RS03265 Genome accession   NZ_CP126975
Coordinates   671588..672541 (+) Length   317 a.a.
NCBI ID   WP_285091067.1    Uniprot ID   A0AAX3XJ08
Organism   Gallibacterium anatis strain BJF12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 666588..677541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS03240 (QP018_03240) - 667075..668016 (+) 942 WP_285090987.1 ABC transporter ATP-binding protein -
  QP018_RS03245 (QP018_03245) - 668017..668787 (+) 771 WP_013745083.1 ABC transporter permease -
  QP018_RS03250 (QP018_03250) modB 668813..669529 (+) 717 WP_013745082.1 molybdate ABC transporter permease subunit -
  QP018_RS03255 (QP018_03255) modC 669522..670577 (+) 1056 WP_285090989.1 molybdenum ABC transporter ATP-binding protein -
  QP018_RS03260 (QP018_03260) modA 670622..671380 (+) 759 WP_039153506.1 molybdate ABC transporter substrate-binding protein -
  QP018_RS03265 (QP018_03265) ceuB 671588..672541 (+) 954 WP_285091067.1 ABC transporter permease Machinery gene
  QP018_RS03270 (QP018_03270) - 672534..673499 (+) 966 WP_039147924.1 iron chelate uptake ABC transporter family permease subunit -
  QP018_RS03275 (QP018_03275) - 673490..674251 (+) 762 WP_013745077.1 ATP-binding cassette domain-containing protein -
  QP018_RS03280 (QP018_03280) - 674282..675190 (+) 909 WP_013745076.1 ABC transporter substrate-binding protein -
  QP018_RS03285 (QP018_03285) - 675305..677227 (+) 1923 WP_285097449.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34718.82 Da        Isoelectric Point: 8.9889

>NTDB_id=840939 QP018_RS03265 WP_285091067.1 671588..672541(+) (ceuB) [Gallibacterium anatis strain BJF12]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGMMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMTLLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTLLFAYIYAQRFSIVGMGEEFATNLGLNYKQVLYLGLAIVSIVSAIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSHTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=840939 QP018_RS03265 WP_285091067.1 671588..672541(+) (ceuB) [Gallibacterium anatis strain BJF12]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCGGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCTGTCTC
TATTAGCGGTTTACTACAATTTGATGCCGAACAATGGCAAATTTTATTGATCAGCCGTATTCCTCGTTTAGTGAGCATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCACCAACCACC
GCCGGAATGATGGATTGTGCGCGATTAGGTGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCCGCATTTGCCGGCTCATTATTATTTATGACTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACCGCTTTTATCGCCTATCAACAAGATTTA
TTACAAAATTTATCTGCTTGGTTGCAAGGTGATTTTTCGCTAATTATGAGTGGACGCTATGAGATGCTTTATATCAGCAT
CCCAACATTATTATTTGCATATATTTATGCGCAACGTTTTTCTATTGTCGGGATGGGAGAAGAATTTGCCACCAACTTAG
GATTAAATTATAAGCAGGTACTTTATTTAGGACTAGCCATTGTTTCGATTGTGTCCGCTATTGTTATTGTTACCGTAGGA
GTCATTCCTTTTTTAGGATTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAACTTACGCAATACTTTGTCGCA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGGCGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCCGTAGTTGGCGTTTTTGGTAGTGCTATTTTCCTCTATTTATTGTTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.751

97.476

0.514