Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   VKP34_RS06195 Genome accession   NZ_CP142358
Coordinates   1200682..1201470 (+) Length   262 a.a.
NCBI ID   WP_014411883.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195682..1206470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS06130 (VKP34_06130) - 1195977..1196111 (-) 135 WP_012560975.1 hypothetical protein -
  VKP34_RS06135 (VKP34_06135) - 1196113..1196424 (-) 312 WP_014411880.1 hypothetical protein -
  VKP34_RS06140 (VKP34_06140) - 1196502..1196678 (-) 177 WP_002995990.1 helix-turn-helix domain-containing protein -
  VKP34_RS06145 (VKP34_06145) - 1196820..1197038 (+) 219 WP_023079659.1 hypothetical protein -
  VKP34_RS06150 (VKP34_06150) - 1197214..1197423 (+) 210 WP_002984292.1 hypothetical protein -
  VKP34_RS06155 (VKP34_06155) - 1197682..1198191 (+) 510 WP_011017884.1 hypothetical protein -
  VKP34_RS06160 (VKP34_06160) - 1198322..1198531 (+) 210 WP_011017885.1 hypothetical protein -
  VKP34_RS06165 (VKP34_06165) - 1198623..1198862 (-) 240 WP_014411882.1 helix-turn-helix domain-containing protein -
  VKP34_RS06170 (VKP34_06170) - 1198956..1199627 (+) 672 WP_014635527.1 DUF4145 domain-containing protein -
  VKP34_RS06175 (VKP34_06175) - 1199584..1199709 (-) 126 WP_014635528.1 hypothetical protein -
  VKP34_RS06180 (VKP34_06180) - 1199744..1199902 (-) 159 WP_014635529.1 hypothetical protein -
  VKP34_RS06185 (VKP34_06185) - 1199961..1200176 (+) 216 WP_014635530.1 hypothetical protein -
  VKP34_RS06190 (VKP34_06190) - 1200162..1200311 (-) 150 WP_014635531.1 hypothetical protein -
  VKP34_RS06195 (VKP34_06195) irvR 1200682..1201470 (+) 789 WP_014411883.1 S24 family peptidase Regulator
  VKP34_RS06200 (VKP34_06200) - 1201480..1201785 (+) 306 WP_011106738.1 membrane protein -
  VKP34_RS06205 (VKP34_06205) - 1201908..1203050 (+) 1143 WP_003051793.1 tyrosine-type recombinase/integrase -
  VKP34_RS06210 (VKP34_06210) - 1203140..1203415 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  VKP34_RS06215 (VKP34_06215) - 1203514..1204101 (-) 588 WP_002989129.1 YpmS family protein -
  VKP34_RS06220 (VKP34_06220) - 1204079..1204921 (-) 843 WP_168642173.1 SGNH/GDSL hydrolase family protein -
  VKP34_RS06225 (VKP34_06225) - 1204914..1205753 (-) 840 WP_002989125.1 DegV family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30009.16 Da        Isoelectric Point: 8.1141

>NTDB_id=840900 VKP34_RS06195 WP_014411883.1 1200682..1201470(+) (irvR) [Streptococcus pyogenes strain 6702-99]
MARGRGKLTPQDEEYKKIISAKISSLLLENNLKQGHLADALEIPRSSFNEYVKGNSLPNPGNVQKIADYFGLMKSDIDPR
FAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKITSIEKKLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYEGGIYAVEWDGQTYIKKVYREKDGLRLVSLNKKYNDKF
APFSEGPRIIGEIVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=840900 VKP34_RS06195 WP_014411883.1 1200682..1201470(+) (irvR) [Streptococcus pyogenes strain 6702-99]
ATGGCAAGAGGACGAGGGAAATTAACACCTCAAGACGAGGAATACAAAAAGATAATTTCTGCTAAAATTAGCAGTTTATT
GCTAGAAAACAATTTAAAACAAGGACATTTAGCTGATGCATTGGAAATTCCACGAAGTAGTTTTAATGAATATGTCAAAG
GAAATTCCTTACCTAATCCTGGTAACGTTCAAAAGATAGCTGATTATTTCGGGTTAATGAAGTCTGATATAGATCCTAGA
TTTGCACCTCGTAAGAAAAATCACGAACTCAAAATCCCTACTTCTCCACTTGTCAAAAAAATAACCACAACAGTCGTAGA
ATTAAATGTTCCTCGTAAGCAAAAAGTTTTAGACTTTGCAACAGAACAATTGAAAGAGCAAAAAAATAAAATTACTTCAA
TAGAGAAAAAACTATATGAATACAAAGTCTATGAGAAACTTTCCGCAGGTACAGGTTATGGATATTTTGGTGATGGGAAC
TATGATACTGTTTTTTACGACGAAGAATTAGATTACGATTTTGCCTCTTGGGTTTTTGGTGATTCTATGGAACCAACTTA
TCTGAATGGTGAGGTTGTGCTTATAAAACAAACTGGCTTTGATTATGAAGGTGGCATCTATGCCGTAGAGTGGGACGGAC
AAACCTATATTAAGAAAGTTTACAGAGAAAAGGATGGCTTGCGCCTTGTGTCTTTAAATAAAAAATACAATGACAAGTTT
GCTCCTTTTAGTGAAGGCCCTCGTATAATAGGGGAAATTGTCGGTAACTTTATGCCTAAAGAGTACTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(168-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

38.158

100

0.443