Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   VKP34_RS03480 Genome accession   NZ_CP142358
Coordinates   667725..668795 (+) Length   356 a.a.
NCBI ID   WP_136112119.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 662725..673795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS03460 (VKP34_03460) - 663717..664415 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  VKP34_RS03465 (VKP34_03465) - 664513..664845 (+) 333 WP_002989745.1 putative DNA-binding protein -
  VKP34_RS03470 (VKP34_03470) ffh 664860..666422 (+) 1563 WP_002993302.1 signal recognition particle protein -
  VKP34_RS03475 (VKP34_03475) - 666557..667255 (-) 699 WP_014635476.1 XRE family transcriptional regulator -
  VKP34_RS03480 (VKP34_03480) xerS 667725..668795 (+) 1071 WP_136112119.1 tyrosine recombinase XerS Machinery gene
  VKP34_RS03485 (VKP34_03485) - 669494..669976 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  VKP34_RS03490 (VKP34_03490) citC 670065..671117 (+) 1053 WP_002991776.1 [citrate (pro-3S)-lyase] ligase -
  VKP34_RS03495 (VKP34_03495) - 671227..672621 (-) 1395 WP_326658391.1 oxaloacetate decarboxylase subunit alpha -
  VKP34_RS03500 (VKP34_03500) citX 672636..673214 (-) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=840880 VKP34_RS03480 WP_136112119.1 667725..668795(+) (xerS) [Streptococcus pyogenes strain 6702-99]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEVVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=840880 VKP34_RS03480 WP_136112119.1 667725..668795(+) (xerS) [Streptococcus pyogenes strain 6702-99]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTTTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
TAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803