Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   F6I26_RS08345 Genome accession   NZ_CP126961
Coordinates   1635801..1638080 (+) Length   759 a.a.
NCBI ID   WP_070241924.1    Uniprot ID   A0A413KKF3
Organism   Streptococcus anginosus strain UMB4708     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1630801..1643080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS08320 (F6I26_008320) - 1631790..1632332 (-) 543 WP_024052843.1 ClbS/DfsB family four-helix bundle protein -
  F6I26_RS08325 (F6I26_008325) - 1632406..1632540 (-) 135 WP_003023693.1 FeoB-associated Cys-rich membrane protein -
  F6I26_RS08330 (F6I26_008330) feoB 1632549..1634693 (-) 2145 WP_150888233.1 ferrous iron transport protein B -
  F6I26_RS08335 (F6I26_008335) - 1634690..1635166 (-) 477 WP_024052845.1 FeoA family protein -
  F6I26_RS08340 (F6I26_008340) - 1635332..1635562 (-) 231 WP_024052846.1 DUF1797 family protein -
  F6I26_RS08345 (F6I26_008345) clpE 1635801..1638080 (+) 2280 WP_070241924.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  F6I26_RS08350 (F6I26_008350) - 1638124..1638729 (-) 606 WP_070584407.1 GyrI-like domain-containing protein -
  F6I26_RS08355 (F6I26_008355) - 1638881..1639816 (-) 936 WP_101749937.1 IS30 family transposase -
  F6I26_RS08360 (F6I26_008360) - 1640180..1641304 (+) 1125 WP_024051514.1 PTS sugar transporter subunit IIC -
  F6I26_RS08365 (F6I26_008365) - 1641380..1641829 (+) 450 WP_024051513.1 NUDIX hydrolase -
  F6I26_RS08370 (F6I26_008370) - 1641893..1642192 (+) 300 WP_024051512.1 DUF1827 family protein -

Sequence


Protein


Download         Length: 759 a.a.        Molecular weight: 84729.91 Da        Isoelectric Point: 5.0280

>NTDB_id=840797 F6I26_RS08345 WP_070241924.1 1635801..1638080(+) (clpE) [Streptococcus anginosus strain UMB4708]
MLCQNCKINESTIHLYTNVNGKQHQVDLCQNCYQIMKTDPNNALFRGMTNMNNQNNLDPFDDFFNNLGNFQNHQEPQTPP
TQSGGGYGNGGYGSNQGGSARQQAPQQPKGLLEEFGINVTEFARRGEIDPVIGRDEEIVRVIEILNRRTKNNPVLIGEPG
VGKTAVVEGLAQKIVDGDVPHKLQGKEVIRLDVVSLVQGTGIRGQFEERMQKLMNEIRSRQDVILFIDEIHEIVGAGSAG
DGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTIEETITILKGIQKKYEDYHHVKYTDDAI
EAAAVLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLVEAENLKAQATRDEDFEKAAYFRDQIAKYKEMQ
QNKMADQDTPIISEKTIEHIIEQKTNIPVGDLKEKEQSQLISLADDLKAHVIGQDDAVDKIAKAIRRNRVGLGSPNRPIG
SFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYEEAGQLTERVRRNPYSLILLDEV
EKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEANVGFGATREGRTNSVLGELGNFFSPEFMNRFD
GIIEFKSLDKENLLKIVDLMLKDVNERLATNDIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDHIEDAITDYYLEHPS
EKELKAVMTSNGKIVIKSAKKAENEADKEIQKPADNNAN

Nucleotide


Download         Length: 2280 bp        

>NTDB_id=840797 F6I26_RS08345 WP_070241924.1 1635801..1638080(+) (clpE) [Streptococcus anginosus strain UMB4708]
ATGCTTTGTCAAAATTGTAAAATAAATGAATCTACCATTCATCTTTACACGAATGTGAATGGAAAACAACACCAAGTTGA
CCTCTGTCAAAATTGTTATCAAATCATGAAAACAGACCCAAACAATGCCTTGTTTCGTGGAATGACCAATATGAATAATC
AAAACAACTTAGACCCTTTTGATGATTTCTTTAACAATCTAGGGAATTTTCAAAATCATCAAGAACCACAAACCCCTCCG
ACTCAATCTGGAGGTGGTTACGGCAATGGAGGTTACGGTTCCAATCAAGGTGGGAGTGCACGCCAGCAAGCTCCGCAACA
GCCTAAAGGCCTCCTAGAAGAATTTGGTATCAATGTAACCGAATTTGCTCGGCGCGGTGAAATTGACCCTGTCATCGGTC
GTGATGAGGAAATCGTCCGCGTCATTGAAATTCTCAACCGTCGAACAAAGAACAATCCAGTCCTCATCGGAGAGCCTGGT
GTCGGTAAAACAGCAGTTGTCGAAGGCTTAGCTCAGAAAATTGTAGATGGAGATGTTCCACATAAACTCCAAGGCAAAGA
AGTCATTCGTTTAGATGTCGTTAGTTTGGTTCAAGGGACTGGAATCCGTGGTCAATTTGAAGAGCGAATGCAAAAACTCA
TGAACGAAATTCGCTCTCGACAAGATGTTATATTATTCATTGATGAAATTCACGAAATTGTTGGAGCTGGTTCTGCTGGC
GATGGAAATATGGATGCTGGAAATATCCTAAAACCAGCACTTGCTCGCGGTGAACTCCAATTAGTCGGTGCCACAACTCT
CAATGAGTATCGCATTATCGAAAAAGATGCAGCACTGGAACGCCGGATGCAGCCAGTAAAAGTGGATGAACCAACGATTG
AAGAAACCATTACTATTCTAAAAGGCATTCAAAAAAAATACGAAGACTATCATCACGTTAAATACACAGATGATGCTATT
GAAGCGGCGGCTGTCTTGTCCAATCGTTATATCCAAGATCGCTTCTTGCCCGATAAGGCCATTGACTTGCTAGACGAAGC
AGGTTCAAAGATGAATTTGACACTTAATTTTGTTGATCCCAAAGTTATTGATCAACGCTTGGTAGAAGCTGAAAACCTCA
AGGCACAAGCTACTCGTGATGAAGATTTTGAAAAAGCTGCTTATTTCCGTGACCAAATTGCCAAATACAAAGAAATGCAG
CAAAATAAAATGGCAGACCAAGATACACCTATCATCAGTGAAAAAACGATTGAGCATATCATTGAGCAAAAAACAAATAT
CCCAGTTGGTGACTTAAAAGAAAAGGAACAATCGCAATTAATTAGTCTGGCTGATGATTTGAAAGCTCATGTCATCGGTC
AAGATGATGCCGTTGATAAAATTGCAAAAGCTATTCGCCGTAATCGTGTCGGACTTGGCTCTCCTAATCGACCAATTGGA
TCCTTCCTCTTTGTCGGACCAACCGGTGTCGGTAAAACAGAACTTTCTAAACAATTAGCGATTGAGCTCTTTGGCTCAGC
TGACAGCATGATTCGCTTTGATATGAGTGAATATATGGAAAAACACAGCGTAGCCAAACTCGTTGGAGCACCTCCAGGCT
ATGTTGGCTACGAAGAAGCCGGACAATTGACAGAACGCGTACGCCGCAATCCTTATTCTCTCATTCTGCTTGACGAAGTA
GAAAAAGCGCACCCAGATGTCATGCACATGTTCCTGCAAGTTCTTGACGATGGACGTCTGACAGACGGACAAGGGCGCAC
AGTTAGCTTTAAAGATACAATTATCATCATGACTTCAAACGCCGGTACTGGCAAAGTTGAAGCAAATGTTGGTTTTGGAG
CAACACGCGAAGGACGGACTAACTCTGTTCTCGGTGAATTAGGCAACTTCTTCAGTCCAGAATTTATGAACCGCTTTGAC
GGTATTATCGAATTTAAGTCCCTTGATAAGGAAAATCTCCTAAAAATCGTAGACTTGATGCTAAAAGATGTCAATGAACG
ACTTGCAACAAATGACATTCACCTAGACGTGACAGACAAAGTCAAGGAAAAATTAGTTGACTTGGGTTACGATCCGAAAA
TGGGAGCTCGTCCTCTGCGTCGGACAATCCAAGATCACATCGAAGACGCCATTACTGACTACTACCTTGAACACCCAAGT
GAAAAAGAACTCAAGGCTGTCATGACAAGCAACGGTAAAATTGTCATCAAATCGGCTAAAAAAGCTGAAAATGAAGCCGA
CAAAGAAATCCAAAAACCAGCAGATAACAATGCTAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A413KKF3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

87.919

98.155

0.863

  clpE Streptococcus pneumoniae D39

87.919

98.155

0.863

  clpE Streptococcus pneumoniae R6

87.919

98.155

0.863

  clpE Streptococcus pneumoniae TIGR4

87.785

98.155

0.862

  clpE Streptococcus mutans UA159

85.274

98.419

0.839

  clpC Lactococcus lactis subsp. cremoris KW2

76.053

100

0.762

  clpC Bacillus subtilis subsp. subtilis str. 168

49.713

91.963

0.457

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.325

82.609

0.399

  clpC Streptococcus pneumoniae Rx1

48.148

81.818

0.394

  clpC Streptococcus pneumoniae D39

48.148

81.818

0.394

  clpC Streptococcus pneumoniae TIGR4

47.987

81.818

0.393

  clpC Streptococcus mutans UA159

47.021

81.818

0.385

  clpC Streptococcus thermophilus LMD-9

46.549

82.082

0.382

  clpC Streptococcus thermophilus LMG 18311

46.474

82.213

0.382