Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   F6I26_RS03485 Genome accession   NZ_CP126961
Coordinates   688931..689776 (+) Length   281 a.a.
NCBI ID   WP_070815147.1    Uniprot ID   A0AAW5TIQ4
Organism   Streptococcus anginosus strain UMB4708     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 683931..694776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I26_RS03455 (F6I26_003455) - 684258..685136 (+) 879 WP_070815148.1 F0F1 ATP synthase subunit gamma -
  F6I26_RS03460 (F6I26_003460) atpD 685171..686577 (+) 1407 WP_003030503.1 F0F1 ATP synthase subunit beta -
  F6I26_RS03465 (F6I26_003465) - 686588..687007 (+) 420 WP_003025266.1 F0F1 ATP synthase subunit epsilon -
  F6I26_RS03470 (F6I26_003470) - 687112..687342 (+) 231 WP_022526685.1 DUF1146 family protein -
  F6I26_RS03475 (F6I26_003475) murA 687381..688661 (+) 1281 WP_003030496.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  F6I26_RS03480 (F6I26_003480) - 688654..688830 (+) 177 WP_003030460.1 DNA-directed RNA polymerase subunit beta -
  F6I26_RS03485 (F6I26_003485) endA 688931..689776 (+) 846 WP_070815147.1 DNA/RNA non-specific endonuclease Machinery gene
  F6I26_RS03490 (F6I26_003490) - 690066..691802 (+) 1737 WP_150887968.1 ABC transporter ATP-binding protein -
  F6I26_RS03495 (F6I26_003495) - 691812..693581 (+) 1770 WP_150887970.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30904.53 Da        Isoelectric Point: 10.1642

>NTDB_id=840787 F6I26_RS03485 WP_070815147.1 688931..689776(+) (endA) [Streptococcus anginosus strain UMB4708]
MARKKSNQKVAQSVVGVFLALVLALGGYSFSNHRTSTSHSDSSAINRSIRMNHAAPSQELAQSVVTESVKRQLEGKIEWN
GSGAFIINENKTTLDAKIASVPYADNKTKLVRGQTVPTVANALLSKATRQYKNREETGNGSTTWTPAGWHQVKHLSGEYN
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANTSYSTGQNFYETKIRKALDKNKRVRYRVTLIYDNEQDLV
PVGSHIEGKSNDDNLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=840787 F6I26_RS03485 WP_070815147.1 688931..689776(+) (endA) [Streptococcus anginosus strain UMB4708]
ATGGCGAGAAAGAAGTCCAACCAGAAAGTAGCGCAAAGTGTAGTAGGCGTATTTCTTGCACTCGTTCTTGCGCTGGGAGG
TTATTCTTTTAGCAATCATCGCACTAGTACGAGTCATTCTGATAGCTCTGCTATTAATCGAAGTATTCGGATGAATCATG
CAGCACCCAGTCAAGAATTAGCACAGAGTGTTGTGACAGAATCCGTTAAACGACAGCTCGAAGGAAAGATCGAATGGAAT
GGATCGGGAGCCTTTATAATCAACGAAAATAAAACAACATTGGATGCCAAAATTGCAAGCGTTCCTTACGCGGATAATAA
GACCAAGCTTGTTCGAGGTCAGACTGTTCCGACTGTAGCTAATGCTCTTTTATCCAAAGCCACTCGTCAGTATAAGAATC
GTGAGGAGACAGGAAATGGCTCCACGACTTGGACACCTGCTGGTTGGCATCAGGTGAAGCATTTATCAGGTGAATACAAT
CATGCGGTTGACCGTGGGCATTTGTTGGGTTATGCTTTGATTGGCAACTTGAAAGGCTTTGATGCTTCGACCAGCAACCC
GAAAAACATCGCTGTGCAAACAGCTTGGGCTAATCAAGCCAATACTAGTTATTCTACGGGTCAAAATTTTTATGAAACAA
AGATACGTAAGGCACTAGACAAAAATAAACGAGTTCGGTATCGGGTGACTTTGATTTATGACAATGAACAGGATTTGGTG
CCGGTTGGTTCGCATATTGAAGGCAAATCTAATGACGACAATCTGGAAATAAATGTCTTTGTCCCCAACGTACAGACAGG
AATTCGATTAAATTATCAGACAGGAGAAGTGACCGTTACCAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

75.664

80.427

0.609
  endA Streptococcus pneumoniae D39

75.664

80.427

0.609
  endA Streptococcus pneumoniae R6

75.664

80.427

0.609
  endA Streptococcus pneumoniae TIGR4

75.664

80.427

0.609