Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   VKP36_RS03715 Genome accession   NZ_CP142357
Coordinates   738078..740288 (+) Length   736 a.a.
NCBI ID   WP_136047837.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain AW-534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 733078..745288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP36_RS03685 (VKP36_03685) - 733225..733401 (-) 177 WP_002984898.1 DUF3042 family protein -
  VKP36_RS03690 (VKP36_03690) miaA 733535..734434 (+) 900 WP_115230562.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  VKP36_RS03695 (VKP36_03695) hflX 734507..735745 (+) 1239 WP_115230561.1 GTPase HflX -
  VKP36_RS03700 (VKP36_03700) - 735738..736373 (+) 636 WP_023609857.1 hypothetical protein -
  VKP36_RS03705 (VKP36_03705) rnz 736388..737317 (+) 930 WP_009881223.1 ribonuclease Z -
  VKP36_RS03710 (VKP36_03710) - 737317..738081 (+) 765 WP_326625397.1 SDR family oxidoreductase -
  VKP36_RS03715 (VKP36_03715) recJ 738078..740288 (+) 2211 WP_136047837.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  VKP36_RS03720 (VKP36_03720) - 740438..740956 (+) 519 WP_002990109.1 adenine phosphoribosyltransferase -
  VKP36_RS03725 (VKP36_03725) - 741037..741720 (+) 684 WP_053308318.1 DnaD domain-containing protein -
  VKP36_RS03730 (VKP36_03730) nth 741717..742373 (+) 657 WP_010922193.1 endonuclease III -
  VKP36_RS03735 (VKP36_03735) - 742445..743131 (+) 687 WP_002990104.1 tRNA (adenine(22)-N(1))-methyltransferase -
  VKP36_RS03740 (VKP36_03740) - 743121..743909 (+) 789 WP_002984887.1 Nif3-like dinuclear metal center hexameric protein -
  VKP36_RS03745 (VKP36_03745) - 743949..745055 (+) 1107 WP_014407520.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82547.39 Da        Isoelectric Point: 4.7844

>NTDB_id=840786 VKP36_RS03715 WP_136047837.1 738078..740288(+) (recJ) [Streptococcus pyogenes strain AW-534]
MIKSKYSWKIKDKKPDDGFFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLHDPYLLHDMAKAVPRIRQAIEE
GERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFTDGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQ
EQEVDVIVTDHHSLPEELPEAFAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLPTDCLDLVAIGTIADMVSLTGENR
VLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGRLDDPNPAIELLTGFDDQEAQAIALMIKKKN
EERKALVQDIFDQAMAMVDPQKPVQVLAQAGWHPGVLGIVAGRIMETIGQTVVVLTIDNGFAKGSARSLEAINIFEALNG
KRELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSLDILKSLDKLAPYGMDHQKP
VFYVKDIRVSQARTIGQDQSHLKFKVSQGKASFDVLAFGQGSQLQEFRQATGLELAVTLSVNHWNGNTSLQFMLVDARVD
GVQLLDLRTKTAKVPEGIPTIEEDPNARVILINDIPEDFKTWRNQFVHKDFDAIYFKNQMKHPYYLTGFGSREQFAKLYK
TIYQFPEFDLRHKLTELSHYLNIEKLLLIKLIQIFEELSFVTIDDGLITVNPQAQKREISESHIYQDLKELVKFQEIMAL
ASPKEMYDYLVKSNDQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=840786 VKP36_RS03715 WP_136047837.1 738078..740288(+) (recJ) [Streptococcus pyogenes strain AW-534]
ATGATTAAATCCAAATATAGCTGGAAAATAAAAGACAAGAAGCCAGATGATGGCTTCTTTAAGCTAGCAAAGACAAAAGG
TCTAACCCAGACCGCCGCTCAGTTGATTTATGATCGAGGGATAAGGACTGAAGAAGCCTTAGATGAGTTTTTAACAGCGG
ACTTGTCTCAACTGCATGATCCTTACTTGCTACATGACATGGCAAAAGCTGTGCCAAGAATTCGTCAAGCTATTGAAGAG
GGCGAACGAATTCTCATTTACGGCGACTATGATGCTGATGGCATGACGTCGGCTTCTATTGTCAAAGAAACCCTAGACAT
GATGGGAGCAGAGCCTTTGGTTTATCTTCCCAACCGCTTTACAGATGGCTATGGCCCCAACCAGAGCGTCTATAAATATT
TTATTGAGCAGGAAGCTGTGTCCCTAATTATCACGGTTGATAATGGCGTGGCCGGACATGAAGCGATTAGATATGCTCAA
GAACAGGAAGTTGATGTCATTGTAACTGACCATCATAGCCTGCCTGAAGAATTGCCAGAAGCCTTTGCCATCATTCATCC
TGAGCATCCTGATGCTGATTATCCCTTTAAACACTTAGCTGGCTGTGGCGTTGCCTTTAAATTGGCAACAGCTTTGCTAG
AAAGTTTACCAACAGACTGTCTAGACTTGGTAGCTATTGGAACCATTGCCGATATGGTAAGCTTGACAGGTGAAAACCGT
GTTTTAGTCAAAAATGGTCTGGCCATGCTCAAACACACCGAAAGAGTGGGCTTGCAGGAGTTGATGTCCTTGTCTCCTAT
TGATTTGGAACATTTTAATGAAGACGCCATTGGCTTTCAGATTGCTCCGCAATTAAATGCTTTAGGGCGCTTAGATGACC
CTAATCCAGCCATTGAGCTACTGACGGGCTTTGATGACCAAGAAGCTCAAGCGATTGCCTTGATGATTAAGAAAAAAAAT
GAAGAGCGTAAGGCCTTAGTCCAAGACATTTTTGATCAAGCGATGGCTATGGTTGATCCTCAAAAACCTGTTCAAGTCTT
GGCACAAGCTGGCTGGCATCCTGGTGTTCTTGGGATTGTCGCTGGTCGTATCATGGAAACTATTGGACAAACGGTCGTCG
TTTTGACCATTGATAATGGCTTTGCAAAAGGCTCGGCCAGAAGTTTAGAAGCTATTAATATTTTTGAAGCCTTAAATGGC
AAGCGTGAGTTATTTACAGCTTTTGGGGGACATGCTGGTGCAGCAGGAATGACCCTGCCCGTTGACAACTTGGAAGCTCT
TTCAGACTTTCTTTGTCAGTTTGTGATAGAACGTGGCTTAGATCAGACTGCCAAAAATACGTTAACTATTGATGAAAGAC
TGTCTTTGGACGACCTTAGCCTTGATATTTTAAAGAGTTTAGATAAATTAGCCCCTTATGGGATGGATCATCAAAAGCCG
GTCTTTTATGTCAAGGACATAAGGGTTAGTCAAGCGCGTACCATAGGGCAAGACCAGAGCCATCTTAAATTTAAAGTCAG
TCAGGGCAAAGCTTCCTTTGACGTACTGGCTTTTGGTCAAGGAAGTCAACTGCAAGAGTTCCGACAAGCTACTGGTTTAG
AATTAGCAGTTACCTTATCTGTCAACCATTGGAATGGGAACACGAGTCTCCAATTCATGTTAGTAGATGCTCGTGTTGAC
GGAGTGCAACTTCTTGACTTAAGGACAAAAACAGCCAAAGTTCCTGAAGGTATTCCGACTATTGAAGAAGACCCAAATGC
CAGAGTCATTCTGATTAATGACATCCCTGAAGATTTCAAAACCTGGCGCAACCAGTTTGTTCACAAGGATTTTGACGCCA
TCTATTTTAAAAATCAGATGAAACATCCTTATTATTTAACAGGATTTGGCAGCAGAGAGCAGTTTGCCAAGCTCTACAAA
ACCATCTATCAGTTTCCTGAATTTGATTTACGGCATAAATTGACAGAGTTGAGTCACTATTTAAACATAGAAAAACTTTT
ACTGATTAAGTTGATTCAAATTTTTGAAGAGTTGTCTTTTGTGACGATTGACGATGGGCTGATAACGGTTAACCCCCAAG
CGCAAAAACGAGAGATTTCAGAGAGCCACATTTACCAAGACTTAAAAGAATTGGTGAAATTTCAAGAAATCATGGCTTTG
GCTAGCCCGAAAGAGATGTATGATTATTTGGTGAAATCAAACGATCAATAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-729)

DHHA1 domain (DHHA1)

(317-435)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

62.873

100

0.63
  recJ Bacillus subtilis subsp. subtilis str. 168

34.866

100

0.371