Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VKP54_RS05660 Genome accession   NZ_CP142356
Coordinates   1124263..1125924 (-) Length   553 a.a.
NCBI ID   WP_031488539.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain CT95-157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119263..1130924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP54_RS05635 (VKP54_05635) - 1120249..1120524 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  VKP54_RS05640 (VKP54_05640) - 1120623..1121210 (-) 588 WP_111711355.1 YpmS family protein -
  VKP54_RS05645 (VKP54_05645) - 1121188..1122030 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  VKP54_RS05650 (VKP54_05650) - 1122023..1122862 (-) 840 WP_002989125.1 DegV family protein -
  VKP54_RS05655 (VKP54_05655) - 1123090..1124055 (-) 966 WP_111685789.1 LPXTG cell wall anchor domain-containing protein -
  VKP54_RS05660 (VKP54_05660) recN 1124263..1125924 (-) 1662 WP_031488539.1 DNA repair protein RecN Machinery gene
  VKP54_RS05665 (VKP54_05665) - 1125946..1126416 (-) 471 WP_111711353.1 arginine repressor -
  VKP54_RS05670 (VKP54_05670) - 1126403..1127230 (-) 828 WP_031488538.1 TlyA family RNA methyltransferase -
  VKP54_RS05675 (VKP54_05675) - 1127223..1128095 (-) 873 WP_011284950.1 polyprenyl synthetase family protein -
  VKP54_RS05680 (VKP54_05680) - 1128095..1128310 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  VKP54_RS05685 (VKP54_05685) xseA 1128288..1129628 (-) 1341 WP_111711352.1 exodeoxyribonuclease VII large subunit -
  VKP54_RS05690 (VKP54_05690) - 1129781..1130635 (-) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62173.35 Da        Isoelectric Point: 4.5928

>NTDB_id=840710 VKP54_RS05660 WP_031488539.1 1124263..1125924(-) (recN) [Streptococcus pyogenes strain CT95-157]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIVKEYQLLTGDELSSGDLEAELKALEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISKKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIARMLAGADMTEAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=840710 VKP54_RS05660 WP_031488539.1 1124263..1125924(-) (recN) [Streptococcus pyogenes strain CT95-157]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGCGATGAGTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCTGCTTCGGAGTTAAGTGTCTCTCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCCACCAATCCAGGTGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCGGGCGGCGAATTATCACGCTTGATGTTGGCCATCAAGGCAGCTATCTCTAAAAAAGAAGATAAAACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGAGTTGCTCAAGCCATTGCCCAAAAGATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTCATTGCCATCGCTGATTACCAGTATTTTATTTCTAAAGA
GAGTAAAGAAGAGTCCACTGTTTCGAAGGTAAGGTTGTTAACTTCTGAAGAACGTGTGGAAGAAATTGCCAGAATGCTTG
CTGGTGCAGACATGACAGAAGCTGCTCTCACTCAGGCTCGTGAATTACTGGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.662

100

0.448