Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   VKP40_RS01140 Genome accession   NZ_CP142355
Coordinates   201977..202426 (+) Length   149 a.a.
NCBI ID   WP_002986120.1    Uniprot ID   A0A0H2UT44
Organism   Streptococcus pyogenes strain A946     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 196977..207426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS01115 (VKP40_01115) - 197671..198804 (+) 1134 WP_326675871.1 ISAs1-like element IS1548 family transposase -
  VKP40_RS01120 (VKP40_01120) - 198809..198946 (+) 138 WP_326675873.1 hypothetical protein -
  VKP40_RS01125 (VKP40_01125) - 198961..199632 (+) 672 WP_011054156.1 rhomboid family intramembrane serine protease -
  VKP40_RS01130 (VKP40_01130) galU 199731..200630 (-) 900 WP_002986125.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VKP40_RS01135 (VKP40_01135) - 200663..201679 (-) 1017 WP_002986123.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VKP40_RS01140 (VKP40_01140) rcrR 201977..202426 (+) 450 WP_002986120.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  VKP40_RS01145 (VKP40_01145) - 202419..204125 (+) 1707 WP_020904881.1 ABC transporter ATP-binding protein -
  VKP40_RS01150 (VKP40_01150) - 204128..205912 (+) 1785 WP_326675875.1 ABC transporter ATP-binding protein -
  VKP40_RS01155 (VKP40_01155) - 206030..206797 (+) 768 WP_002986113.1 epoxyqueuosine reductase QueH -
  VKP40_RS01160 (VKP40_01160) - 206907..207353 (+) 447 WP_002986111.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17343.25 Da        Isoelectric Point: 9.5568

>NTDB_id=840575 VKP40_RS01140 WP_002986120.1 201977..202426(+) (rcrR) [Streptococcus pyogenes strain A946]
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=840575 VKP40_RS01140 WP_002986120.1 201977..202426(+) (rcrR) [Streptococcus pyogenes strain A946]
ATGTCACAAGTGATAGGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAACATCTAGCAGGTCCTCAAGGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UT44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

93.96

0.443