Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AYR06_RS14595 Genome accession   NZ_CP126908
Coordinates   2922821..2923450 (-) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain 2014EL-1348     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2917821..2928450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR06_RS14580 (AYR06_14560) helD 2918063..2920117 (-) 2055 WP_124783333.1 DNA helicase IV -
  AYR06_RS14585 (AYR06_14565) - 2920240..2920686 (+) 447 WP_001261228.1 YccF domain-containing protein -
  AYR06_RS14590 (AYR06_14570) yccS 2920696..2922861 (+) 2166 WP_072243494.1 YccS family putative transporter -
  AYR06_RS14595 (AYR06_14575) sxy/tfoX 2922821..2923450 (-) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  AYR06_RS14600 (AYR06_14580) sulA 2923668..2924177 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  AYR06_RS14605 (AYR06_14585) ompA 2924533..2925585 (+) 1053 WP_024164823.1 porin OmpA -
  AYR06_RS14610 (AYR06_14590) matP 2925660..2926112 (-) 453 WP_059219816.1 macrodomain Ter protein MatP -
  AYR06_RS14615 (AYR06_14595) - 2926298..2928058 (+) 1761 WP_095575635.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=840428 AYR06_RS14595 WP_059219814.1 2922821..2923450(-) (sxy/tfoX) [Escherichia albertii strain 2014EL-1348]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=840428 AYR06_RS14595 WP_059219814.1 2922821..2923450(-) (sxy/tfoX) [Escherichia albertii strain 2014EL-1348]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895