Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VKP39_RS05680 Genome accession   NZ_CP142353
Coordinates   1126423..1128084 (-) Length   553 a.a.
NCBI ID   WP_030126970.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1121423..1133084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS05655 (VKP39_05655) - 1122481..1122756 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  VKP39_RS05660 (VKP39_05660) - 1122855..1123442 (-) 588 WP_002989129.1 YpmS family protein -
  VKP39_RS05665 (VKP39_05665) - 1123420..1124262 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  VKP39_RS05670 (VKP39_05670) - 1124255..1125094 (-) 840 WP_011054703.1 DegV family protein -
  VKP39_RS05675 (VKP39_05675) - 1125322..1126251 (-) 930 WP_002989123.1 LPXTG cell wall anchor domain-containing protein -
  VKP39_RS05680 (VKP39_05680) recN 1126423..1128084 (-) 1662 WP_030126970.1 DNA repair protein RecN Machinery gene
  VKP39_RS05685 (VKP39_05685) - 1128106..1128576 (-) 471 WP_002983907.1 arginine repressor -
  VKP39_RS05690 (VKP39_05690) - 1128563..1129390 (-) 828 WP_011054705.1 TlyA family RNA methyltransferase -
  VKP39_RS05695 (VKP39_05695) - 1129383..1130255 (-) 873 WP_011054706.1 polyprenyl synthetase family protein -
  VKP39_RS05700 (VKP39_05700) - 1130255..1130470 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  VKP39_RS05705 (VKP39_05705) xseA 1130448..1131788 (-) 1341 WP_326623724.1 exodeoxyribonuclease VII large subunit -
  VKP39_RS05710 (VKP39_05710) - 1131941..1132795 (-) 855 WP_002989114.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62269.44 Da        Isoelectric Point: 4.6120

>NTDB_id=840427 VKP39_RS05680 WP_030126970.1 1126423..1128084(-) (recN) [Streptococcus pyogenes strain D641]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLEAELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=840427 VKP39_RS05680 WP_030126970.1 1126423..1128084(-) (recN) [Streptococcus pyogenes strain D641]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAATACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGACGACTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GCATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452