Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   VKP39_RS05570 Genome accession   NZ_CP142353
Coordinates   1102341..1103003 (-) Length   220 a.a.
NCBI ID   WP_030126965.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097341..1108003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS05540 (VKP39_05540) - 1097387..1097680 (-) 294 WP_306460904.1 hypothetical protein -
  VKP39_RS05545 (VKP39_05545) - 1097677..1097925 (-) 249 WP_011054656.1 hypothetical protein -
  VKP39_RS05550 (VKP39_05550) - 1097910..1098137 (-) 228 WP_011054657.1 hypothetical protein -
  VKP39_RS05555 (VKP39_05555) sodA 1098304..1098909 (-) 606 WP_002983977.1 superoxide dismutase SodA -
  VKP39_RS05560 (VKP39_05560) holA 1099006..1100046 (-) 1041 WP_326623714.1 DNA polymerase III subunit delta -
  VKP39_RS05565 (VKP39_05565) comEC/celB 1100117..1102360 (-) 2244 WP_030126964.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VKP39_RS05570 (VKP39_05570) comEA/celA/cilE 1102341..1103003 (-) 663 WP_030126965.1 ComEA family DNA-binding protein Machinery gene
  VKP39_RS05575 (VKP39_05575) - 1103203..1103943 (-) 741 WP_011054661.1 lysophospholipid acyltransferase family protein -
  VKP39_RS05580 (VKP39_05580) - 1104061..1104837 (+) 777 WP_002994360.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VKP39_RS05585 (VKP39_05585) - 1104827..1105105 (+) 279 WP_002989164.1 GIY-YIG nuclease family protein -
  VKP39_RS05590 (VKP39_05590) - 1105129..1107129 (-) 2001 WP_030126966.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24607.41 Da        Isoelectric Point: 6.7451

>NTDB_id=840424 VKP39_RS05570 WP_030126965.1 1102341..1103003(-) (comEA/celA/cilE) [Streptococcus pyogenes strain D641]
MLDELLIKGKSFLRERYFPPYLISLLLGLFLILSFSFLFWGNRQSKAAVPALREISPVKQQVSEEKKEIQEDNSILVDLK
GAVQKEGVYKLTASSRVRDVIELAGGLTSEADKHAINFAEKLTDEQVVYVPKQGEEISVLPRSLVSGKKETASKDQSKVH
INKASLEELQHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQVSGIGEKTLEKLKDDIFLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=840424 VKP39_RS05570 WP_030126965.1 1102341..1103003(-) (comEA/celA/cilE) [Streptococcus pyogenes strain D641]
ATGTTAGATGAATTATTAATTAAAGGAAAATCGTTTTTGAGAGAGCGGTATTTTCCGCCATACCTAATTAGTCTTTTATT
AGGACTTTTTCTAATACTAAGCTTCAGTTTTTTGTTCTGGGGAAATAGGCAGAGCAAGGCAGCCGTTCCTGCTTTGAGAG
AAATATCGCCTGTGAAACAGCAGGTTAGTGAAGAAAAAAAGGAAATTCAAGAAGATAACAGTATTTTAGTGGATTTAAAA
GGCGCCGTACAAAAAGAGGGAGTTTATAAGCTAACTGCTAGCAGTCGTGTGCGAGATGTCATTGAACTAGCTGGAGGCCT
AACTTCGGAAGCTGATAAACATGCTATTAATTTTGCAGAAAAACTAACTGATGAGCAAGTTGTTTATGTACCTAAACAAG
GAGAAGAGATTTCTGTGCTACCAAGGTCATTAGTTTCTGGTAAAAAAGAAACTGCCAGCAAGGATCAGTCAAAGGTTCAT
ATTAATAAGGCCAGCTTAGAAGAACTACAACATATCCCAGGTATTGGTGCTAAAAGAGCTCAGGATATTATTGATATGAG
AGATAAGTTAGGTGGTTTTAAAGCGTTAGAAGATCTCCGTCAGGTTTCGGGGATTGGCGAAAAAACGCTCGAGAAATTAA
AAGATGACATTTTCTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(156-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

42.995

94.091

0.405