Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   VKP39_RS01080 Genome accession   NZ_CP142353
Coordinates   191227..191676 (+) Length   149 a.a.
NCBI ID   WP_002986120.1    Uniprot ID   A0A0H2UT44
Organism   Streptococcus pyogenes strain D641     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 186227..196676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS01065 (VKP39_01065) - 188211..188882 (+) 672 WP_011017305.1 rhomboid family intramembrane serine protease -
  VKP39_RS01070 (VKP39_01070) galU 188981..189880 (-) 900 WP_002986125.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VKP39_RS01075 (VKP39_01075) - 189913..190929 (-) 1017 WP_030126943.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VKP39_RS01080 (VKP39_01080) rcrR 191227..191676 (+) 450 WP_002986120.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  VKP39_RS01085 (VKP39_01085) - 191669..193375 (+) 1707 WP_030126944.1 ABC transporter ATP-binding protein -
  VKP39_RS01090 (VKP39_01090) - 193378..195162 (+) 1785 WP_030126945.1 ABC transporter ATP-binding protein -
  VKP39_RS01095 (VKP39_01095) - 195280..196047 (+) 768 WP_326623873.1 epoxyqueuosine reductase QueH -
  VKP39_RS01100 (VKP39_01100) - 196157..196603 (+) 447 WP_002986111.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17343.25 Da        Isoelectric Point: 9.5568

>NTDB_id=840381 VKP39_RS01080 WP_002986120.1 191227..191676(+) (rcrR) [Streptococcus pyogenes strain D641]
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=840381 VKP39_RS01080 WP_002986120.1 191227..191676(+) (rcrR) [Streptococcus pyogenes strain D641]
ATGTCACAAGTGATAGGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAACATCTAGCAGGTCCTCAAGGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UT44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

93.96

0.443