Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   VKP39_RS00255 Genome accession   NZ_CP142353
Coordinates   33755..34510 (+) Length   251 a.a.
NCBI ID   WP_030127030.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28755..39510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS08650 - 29770..29976 (-) 207 Protein_14 hypothetical protein -
  VKP39_RS08655 - 30130..30411 (-) 282 WP_109821002.1 transposase -
  VKP39_RS00245 (VKP39_00245) pcsB 31158..32354 (+) 1197 WP_011017226.1 peptidoglycan hydrolase PcsB -
  VKP39_RS00250 (VKP39_00250) - 32607..33569 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  VKP39_RS00255 (VKP39_00255) recO 33755..34510 (+) 756 WP_030127030.1 DNA repair protein RecO Machinery gene
  VKP39_RS00260 (VKP39_00260) plsX 34613..35620 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  VKP39_RS00265 (VKP39_00265) - 35613..35855 (+) 243 WP_002993445.1 phosphopantetheine-binding protein -
  VKP39_RS00270 (VKP39_00270) purC 36006..36710 (+) 705 WP_011054091.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=840366 VKP39_RS00255 WP_030127030.1 33755..34510(+) (recO) [Streptococcus pyogenes strain D641]
MQLTESLGIVLFNRNYREDDKIVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=840366 VKP39_RS00255 WP_030127030.1 33755..34510(+) (recO) [Streptococcus pyogenes strain D641]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAAATAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGTACTGATTTA
CCACTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

59.761

100

0.598