Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   VKP38_RS01400 Genome accession   NZ_CP142352
Coordinates   241443..241892 (+) Length   149 a.a.
NCBI ID   WP_002986120.1    Uniprot ID   A0A0H2UT44
Organism   Streptococcus pyogenes strain 2907-97     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 236443..246892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS01385 (VKP38_01385) - 238427..239098 (+) 672 WP_011017305.1 rhomboid family intramembrane serine protease -
  VKP38_RS01390 (VKP38_01390) galU 239197..240096 (-) 900 WP_136097777.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VKP38_RS01395 (VKP38_01395) - 240129..241145 (-) 1017 WP_002986123.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VKP38_RS01400 (VKP38_01400) rcrR 241443..241892 (+) 450 WP_002986120.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  VKP38_RS01405 (VKP38_01405) - 241885..243591 (+) 1707 WP_010921864.1 ABC transporter ATP-binding protein -
  VKP38_RS01410 (VKP38_01410) - 243594..245378 (+) 1785 WP_002986115.1 ABC transporter ATP-binding protein -
  VKP38_RS01415 (VKP38_01415) - 245496..246263 (+) 768 WP_011054158.1 epoxyqueuosine reductase QueH -
  VKP38_RS01420 (VKP38_01420) - 246373..246819 (+) 447 WP_002986111.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17343.25 Da        Isoelectric Point: 9.5568

>NTDB_id=840284 VKP38_RS01400 WP_002986120.1 241443..241892(+) (rcrR) [Streptococcus pyogenes strain 2907-97]
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=840284 VKP38_RS01400 WP_002986120.1 241443..241892(+) (rcrR) [Streptococcus pyogenes strain 2907-97]
ATGTCACAAGTGATAGGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAACATCTAGCAGGTCCTCAAGGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UT44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

93.96

0.443