Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QPR80_RS08235 Genome accession   NZ_CP126831
Coordinates   1756621..1757247 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain Ehh_13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751621..1762247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR80_RS08215 (QPR80_08215) - 1752020..1753780 (-) 1761 WP_017384808.1 Lon protease family protein -
  QPR80_RS08220 (QPR80_08220) matP 1753967..1754419 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  QPR80_RS08225 (QPR80_08225) ompA 1754485..1755537 (-) 1053 WP_017694761.1 porin OmpA -
  QPR80_RS08230 (QPR80_08230) sulA 1755894..1756403 (-) 510 WP_026080726.1 SOS-induced cell division inhibitor SulA -
  QPR80_RS08235 (QPR80_08235) sxy/tfoX 1756621..1757247 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  QPR80_RS08240 (QPR80_08240) yccS 1757204..1759366 (-) 2163 WP_017384803.1 YccS family putative transporter -
  QPR80_RS08245 (QPR80_08245) - 1759385..1759831 (-) 447 WP_003858149.1 YccF domain-containing protein -
  QPR80_RS08250 (QPR80_08250) helD 1759954..1762008 (+) 2055 WP_017384802.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=840117 QPR80_RS08235 WP_017384804.1 1756621..1757247(+) (sxy/tfoX) [Enterobacter hormaechei strain Ehh_13]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=840117 QPR80_RS08235 WP_017384804.1 1756621..1757247(+) (sxy/tfoX) [Enterobacter hormaechei strain Ehh_13]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTAACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATTCGGGTATTGTTCGCGCTTGAAGGCGCCATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572