Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   VKP56_RS01095 Genome accession   NZ_CP142350
Coordinates   195479..195928 (+) Length   149 a.a.
NCBI ID   WP_002986120.1    Uniprot ID   A0A0H2UT44
Organism   Streptococcus pyogenes strain SS1445     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 190479..200928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS01080 (VKP56_01080) - 192463..193134 (+) 672 WP_011054156.1 rhomboid family intramembrane serine protease -
  VKP56_RS01085 (VKP56_01085) galU 193233..194132 (-) 900 WP_002986125.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VKP56_RS01090 (VKP56_01090) - 194165..195181 (-) 1017 WP_326657190.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VKP56_RS01095 (VKP56_01095) rcrR 195479..195928 (+) 450 WP_002986120.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  VKP56_RS01100 (VKP56_01100) - 195921..197627 (+) 1707 WP_011284484.1 ABC transporter ATP-binding protein -
  VKP56_RS01105 (VKP56_01105) - 197630..199414 (+) 1785 WP_326657192.1 ABC transporter ATP-binding protein -
  VKP56_RS01110 (VKP56_01110) - 199532..200299 (+) 768 WP_011054158.1 epoxyqueuosine reductase QueH -
  VKP56_RS01115 (VKP56_01115) - 200409..200855 (+) 447 WP_111713136.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17343.25 Da        Isoelectric Point: 9.5568

>NTDB_id=840096 VKP56_RS01095 WP_002986120.1 195479..195928(+) (rcrR) [Streptococcus pyogenes strain SS1445]
MSQVIGDLRELIHQIEQISDEIAKKYDVEHLAGPQGYVLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFIN
VMPSQVDKRYKQVVLAQVGRDKLPLLRECRKDIEHYFLKEITKEELLTAKKVIEQLKQNMLTYKGDNDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=840096 VKP56_RS01095 WP_002986120.1 195479..195928(+) (rcrR) [Streptococcus pyogenes strain SS1445]
ATGTCACAAGTGATAGGTGATTTACGTGAATTGATACATCAAATCGAACAAATTAGTGATGAGATTGCAAAAAAATATGA
TGTAGAACATCTAGCAGGTCCTCAAGGTTATGTTCTTGTTTTTTTAGCTAAACACCAAAATCAAGAAATATTTGTCAAAG
ATATTGAAAAACAACTTCGTATCTCAAAGTCAGTTGCTAGTCATTTAGTGAAACGTATGGTCAAAAATGGGTTTATCAAT
GTGATGCCTTCCCAAGTGGATAAGCGTTATAAGCAAGTAGTGTTAGCGCAGGTTGGTAGAGATAAATTGCCTTTGTTGCG
GGAGTGTCGTAAGGATATCGAGCACTATTTTTTAAAAGAAATTACAAAAGAAGAGTTGCTGACAGCGAAAAAAGTAATTG
AACAGCTCAAGCAAAATATGCTAACTTATAAAGGAGACAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UT44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

93.96

0.443