Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   VKP56_RS00255 Genome accession   NZ_CP142350
Coordinates   33736..34491 (+) Length   251 a.a.
NCBI ID   WP_002986719.1    Uniprot ID   A2RBY9
Organism   Streptococcus pyogenes strain SS1445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28736..39491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS00245 (VKP56_00245) pcsB 31139..32335 (+) 1197 WP_012560362.1 peptidoglycan hydrolase PcsB -
  VKP56_RS00250 (VKP56_00250) - 32588..33550 (+) 963 WP_021340855.1 ribose-phosphate diphosphokinase -
  VKP56_RS00255 (VKP56_00255) recO 33736..34491 (+) 756 WP_002986719.1 DNA repair protein RecO Machinery gene
  VKP56_RS00260 (VKP56_00260) plsX 34594..35601 (+) 1008 WP_011284400.1 phosphate acyltransferase PlsX -
  VKP56_RS00265 (VKP56_00265) - 35594..35836 (+) 243 WP_002986713.1 phosphopantetheine-binding protein -
  VKP56_RS00270 (VKP56_00270) purC 35987..36691 (+) 705 WP_002987701.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=840081 VKP56_RS00255 WP_002986719.1 33736..34491(+) (recO) [Streptococcus pyogenes strain SS1445]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=840081 VKP56_RS00255 WP_002986719.1 33736..34491(+) (recO) [Streptococcus pyogenes strain SS1445]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCGAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RBY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602