Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | L6421_RS10185 | Genome accession | NZ_AP024202 |
| Coordinates | 2251455..2252750 (+) | Length | 431 a.a. |
| NCBI ID | WP_237261689.1 | Uniprot ID | - |
| Organism | Thiomicrorhabdus immobilis strain Am19 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2246455..2257750
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6421_RS10160 (THMIRHAM_19990) | - | 2246578..2247141 (+) | 564 | WP_237261684.1 | DUF4136 domain-containing protein | - |
| L6421_RS10165 (THMIRHAM_20000) | - | 2247210..2247683 (-) | 474 | WP_237261685.1 | NYN domain-containing protein | - |
| L6421_RS10170 (THMIRHAM_20010) | - | 2247738..2248415 (-) | 678 | WP_237261686.1 | NAD(P)H-dependent oxidoreductase | - |
| L6421_RS10175 (THMIRHAM_20020) | - | 2248549..2249868 (-) | 1320 | WP_237261687.1 | pitrilysin family protein | - |
| L6421_RS10180 (THMIRHAM_20030) | - | 2249868..2251256 (-) | 1389 | WP_237261688.1 | pitrilysin family protein | - |
| L6421_RS10185 (THMIRHAM_20040) | pilA | 2251455..2252750 (+) | 1296 | WP_237261689.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| L6421_RS10190 (THMIRHAM_20050) | - | 2252767..2253603 (+) | 837 | WP_237261690.1 | DUF2914 domain-containing protein | - |
| L6421_RS10195 (THMIRHAM_20060) | - | 2253600..2254190 (+) | 591 | WP_237261691.1 | transglycosylase SLT domain-containing protein | - |
| L6421_RS10200 (THMIRHAM_20070) | fabB | 2254389..2255609 (-) | 1221 | WP_237261692.1 | beta-ketoacyl-ACP synthase I | - |
| L6421_RS10205 (THMIRHAM_20080) | fabA | 2255612..2256127 (-) | 516 | WP_237261693.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA | - |
| L6421_RS10215 (THMIRHAM_20090) | - | 2256393..2257169 (-) | 777 | WP_237261694.1 | type III pantothenate kinase | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 47018.88 Da Isoelectric Point: 4.4651
>NTDB_id=84002 L6421_RS10185 WP_237261689.1 2251455..2252750(+) (pilA) [Thiomicrorhabdus immobilis strain Am19]
MFSFLRRKKNQEETSQQAIEESLVETNLEPQPEKNEIAQIRDDSTEQPGKGTQEADALETTGPSNGQTPVEQGNVQQEPA
EQPEPSVQFEETQSNSETEQPVEPARQEPITEEPSAEKQSFFTRLKKGLSKTRHSFTESIASLVLGRKEIDDDLLDELEM
ILLTADVGIDATDRIIQNLTEQVSRKELKDPEALITSLKSQLQQILAPMTAPLDIDAHLAKNQGPFVILMVGINGVGKTT
TIGKLAKKYQLEGKSVMLAAGDTFRAAAVEQLQTWGERNNVPVMAQKTGADSAAVIFDAIQSAKAKKIDVLIADTAGRLH
TQSNLMEELKKVKRVIAKVDATAPHEVMLVIDAGTGQNALNQAQQFQEAVDVSGITLTKLDGTAKGGIVFALAEQRQIPI
RFIGVGESIDDLRAFDSKSFTEALFDQSTTG
MFSFLRRKKNQEETSQQAIEESLVETNLEPQPEKNEIAQIRDDSTEQPGKGTQEADALETTGPSNGQTPVEQGNVQQEPA
EQPEPSVQFEETQSNSETEQPVEPARQEPITEEPSAEKQSFFTRLKKGLSKTRHSFTESIASLVLGRKEIDDDLLDELEM
ILLTADVGIDATDRIIQNLTEQVSRKELKDPEALITSLKSQLQQILAPMTAPLDIDAHLAKNQGPFVILMVGINGVGKTT
TIGKLAKKYQLEGKSVMLAAGDTFRAAAVEQLQTWGERNNVPVMAQKTGADSAAVIFDAIQSAKAKKIDVLIADTAGRLH
TQSNLMEELKKVKRVIAKVDATAPHEVMLVIDAGTGQNALNQAQQFQEAVDVSGITLTKLDGTAKGGIVFALAEQRQIPI
RFIGVGESIDDLRAFDSKSFTEALFDQSTTG
Nucleotide
Download Length: 1296 bp
>NTDB_id=84002 L6421_RS10185 WP_237261689.1 2251455..2252750(+) (pilA) [Thiomicrorhabdus immobilis strain Am19]
ATGTTTAGTTTTTTGCGCCGCAAGAAAAATCAAGAAGAGACTTCACAACAGGCTATTGAAGAGAGCTTGGTAGAGACAAA
TCTAGAGCCACAACCAGAAAAAAACGAGATTGCACAAATCCGTGACGATTCGACTGAACAGCCAGGCAAGGGAACCCAAG
AAGCTGACGCTCTTGAAACCACTGGACCTAGCAACGGGCAAACGCCTGTCGAGCAAGGCAACGTTCAGCAAGAACCAGCA
GAACAACCAGAACCATCGGTACAATTTGAAGAAACACAATCCAATTCTGAAACGGAACAACCGGTTGAGCCAGCACGCCA
AGAACCAATCACGGAAGAGCCTTCAGCTGAAAAACAGAGTTTTTTCACGCGCCTAAAAAAAGGACTAAGCAAAACCCGTC
ATAGCTTTACCGAAAGCATTGCCAGCCTGGTATTGGGGCGCAAAGAGATTGATGACGACTTGCTTGATGAGTTGGAAATG
ATTCTTCTGACCGCCGACGTGGGAATCGATGCCACCGACCGCATCATCCAAAATCTAACCGAGCAGGTTTCACGTAAAGA
ACTTAAAGACCCTGAAGCATTGATCACCTCGTTAAAGTCGCAACTACAACAAATTTTAGCGCCGATGACCGCCCCACTTG
ATATTGATGCCCATTTGGCTAAAAACCAAGGGCCTTTTGTGATTTTAATGGTAGGCATTAACGGTGTTGGTAAGACCACG
ACCATCGGTAAGCTGGCAAAAAAATATCAACTCGAAGGTAAGTCTGTCATGCTGGCCGCCGGCGACACTTTCCGCGCCGC
TGCGGTAGAACAATTACAAACTTGGGGGGAACGTAATAATGTTCCGGTTATGGCACAAAAAACGGGAGCGGATTCCGCTG
CGGTGATTTTTGATGCAATCCAATCAGCTAAAGCGAAAAAGATTGATGTTCTGATTGCCGATACCGCTGGTCGTTTGCAT
ACTCAGTCCAATTTAATGGAAGAACTTAAAAAGGTAAAACGTGTCATCGCTAAAGTGGACGCAACGGCACCACATGAAGT
CATGCTGGTGATTGATGCCGGAACCGGGCAAAATGCCTTGAACCAAGCTCAGCAATTCCAAGAAGCGGTAGATGTCTCCG
GCATTACATTAACCAAGCTAGATGGAACCGCTAAAGGTGGAATTGTGTTTGCCTTGGCCGAACAGCGTCAGATTCCTATT
CGTTTTATTGGTGTTGGAGAATCGATTGACGATTTACGCGCTTTTGACAGCAAGAGCTTTACCGAAGCACTGTTTGATCA
ATCCACAACGGGTTAA
ATGTTTAGTTTTTTGCGCCGCAAGAAAAATCAAGAAGAGACTTCACAACAGGCTATTGAAGAGAGCTTGGTAGAGACAAA
TCTAGAGCCACAACCAGAAAAAAACGAGATTGCACAAATCCGTGACGATTCGACTGAACAGCCAGGCAAGGGAACCCAAG
AAGCTGACGCTCTTGAAACCACTGGACCTAGCAACGGGCAAACGCCTGTCGAGCAAGGCAACGTTCAGCAAGAACCAGCA
GAACAACCAGAACCATCGGTACAATTTGAAGAAACACAATCCAATTCTGAAACGGAACAACCGGTTGAGCCAGCACGCCA
AGAACCAATCACGGAAGAGCCTTCAGCTGAAAAACAGAGTTTTTTCACGCGCCTAAAAAAAGGACTAAGCAAAACCCGTC
ATAGCTTTACCGAAAGCATTGCCAGCCTGGTATTGGGGCGCAAAGAGATTGATGACGACTTGCTTGATGAGTTGGAAATG
ATTCTTCTGACCGCCGACGTGGGAATCGATGCCACCGACCGCATCATCCAAAATCTAACCGAGCAGGTTTCACGTAAAGA
ACTTAAAGACCCTGAAGCATTGATCACCTCGTTAAAGTCGCAACTACAACAAATTTTAGCGCCGATGACCGCCCCACTTG
ATATTGATGCCCATTTGGCTAAAAACCAAGGGCCTTTTGTGATTTTAATGGTAGGCATTAACGGTGTTGGTAAGACCACG
ACCATCGGTAAGCTGGCAAAAAAATATCAACTCGAAGGTAAGTCTGTCATGCTGGCCGCCGGCGACACTTTCCGCGCCGC
TGCGGTAGAACAATTACAAACTTGGGGGGAACGTAATAATGTTCCGGTTATGGCACAAAAAACGGGAGCGGATTCCGCTG
CGGTGATTTTTGATGCAATCCAATCAGCTAAAGCGAAAAAGATTGATGTTCTGATTGCCGATACCGCTGGTCGTTTGCAT
ACTCAGTCCAATTTAATGGAAGAACTTAAAAAGGTAAAACGTGTCATCGCTAAAGTGGACGCAACGGCACCACATGAAGT
CATGCTGGTGATTGATGCCGGAACCGGGCAAAATGCCTTGAACCAAGCTCAGCAATTCCAAGAAGCGGTAGATGTCTCCG
GCATTACATTAACCAAGCTAGATGGAACCGCTAAAGGTGGAATTGTGTTTGCCTTGGCCGAACAGCGTCAGATTCCTATT
CGTTTTATTGGTGTTGGAGAATCGATTGACGATTTACGCGCTTTTGACAGCAAGAGCTTTACCGAAGCACTGTTTGATCA
ATCCACAACGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
48.268 |
100 |
0.485 |