Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VR625_RS31060 Genome accession   NZ_CP142147
Coordinates   7060973..7063399 (-) Length   808 a.a.
NCBI ID   WP_345983753.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7055973..7068399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS31040 - 7056536..7057432 (-) 897 WP_109162393.1 LysR substrate-binding domain-containing protein -
  VR625_RS31045 - 7057528..7058232 (+) 705 WP_109162392.1 succinate dehydrogenase cytochrome b subunit -
  VR625_RS31050 - 7058234..7060183 (+) 1950 WP_109162391.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  VR625_RS31055 - 7060180..7060926 (+) 747 WP_030575228.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  VR625_RS31060 uvrA 7060973..7063399 (-) 2427 WP_345983753.1 excinuclease ABC subunit UvrA Machinery gene
  VR625_RS31065 - 7064010..7066274 (+) 2265 WP_345983754.1 transglycosylase domain-containing protein -
  VR625_RS31070 - 7066324..7067610 (+) 1287 WP_109162389.1 hypothetical protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 86486.79 Da        Isoelectric Point: 6.7030

>NTDB_id=839985 VR625_RS31060 WP_345983753.1 7060973..7063399(-) (uvrA) [Streptomyces sp. DSS69]
MHSPHDPYVRVRGAREHNLQDVNVDIPRDTLTVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGEYPPGAERLHSDAFSPNTAAGACPECHGLGRIHRTDEEL
LVPDPSLSVRDGAIAAWPGAWQGKNLRDVLDALGYDVDRPWRELAAKDREWILFTDEQPVVTVHPVRDAGRIQRPYRGTY
MSARRYVLHTFADTRSRTLRAKAERFLTSVPCPVCGGSRLRPEAMAVTFAGRTIAELAALPLSALAEVLADAGAGGEETA
RVLTGDLLARIGTVTELGLGYLSLGRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLGVLGRLKE
AGNSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAEVPESATRRFLFPEDDQDPAPVREPRTPSGWIRLS
GVERHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQALAGALADRQAGEEAAGAGERFCASVTGLEAVDRLVQVDQRPIG
RTPRSNLATYTGLFDTVRKLFARTETARERGYTAGRFSFNVSGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNPE
TLEVMLRGLTIAQVLDLTVESAVGFFSGTPAAERPLTTLLDVGLGYLRLGQPATELSGGEAQRIKLASELQRTRRGHTLY
LLDEPTTGLHPADVEVLMRQLHGLVEAHNTVVVVEHDMAVVAGADHVIDMGPGGGDRGGRIVASGTPQEVARAAESRTAP
YLAKALGR

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=839985 VR625_RS31060 WP_345983753.1 7060973..7063399(-) (uvrA) [Streptomyces sp. DSS69]
ATGCACTCCCCCCACGATCCGTACGTCCGGGTGCGCGGCGCACGCGAGCACAACCTCCAGGACGTGAACGTCGACATCCC
GCGCGACACCCTCACGGTGTTCACCGGGGTCTCCGGGTCCGGCAAGTCCTCGCTGGCGTTCGGGACCCTCTACGCCGAGG
CCCAGCGCCGCTACTTCGAGTCGGTCGCCCCCTACGCGCGCCGGCTCATCCACCAGGTGGGCGCCCCCGCCGTCGGGGAG
ATCACCGGGCTGCCGCCCGCCGTCTCCCTGGAGCAGCGGCGATCGGCGCCCGGGGCCCGCTCGTCGGTGGGGACGGTGAC
CACGCTCTCCAACTCGTTGCGGATGCTGTTCTCCCGGGCCGGGGAGTACCCGCCCGGCGCCGAACGCCTCCACTCCGACG
CCTTCTCCCCCAACACGGCGGCCGGGGCCTGTCCCGAGTGCCACGGGCTGGGACGCATCCACCGCACGGACGAGGAGCTG
CTCGTACCCGACCCCTCGCTGTCGGTCCGGGACGGCGCGATCGCCGCCTGGCCGGGGGCCTGGCAGGGGAAGAACCTGCG
CGATGTGCTGGACGCACTCGGGTACGACGTCGACCGGCCGTGGCGCGAGCTGGCGGCGAAGGACCGGGAGTGGATCCTGT
TCACGGATGAGCAGCCGGTGGTGACGGTGCATCCGGTACGGGACGCGGGCCGGATCCAACGCCCTTACCGGGGAACGTAC
ATGAGCGCCCGGCGCTATGTGCTGCACACCTTCGCCGACACCAGGAGCCGCACGCTGCGGGCGAAGGCGGAGCGCTTCCT
GACGAGTGTGCCGTGCCCGGTGTGCGGCGGGAGCAGGCTGCGGCCGGAGGCGATGGCGGTGACCTTCGCCGGGCGGACCA
TCGCGGAGCTGGCCGCGCTTCCGCTGTCCGCACTGGCGGAGGTGCTGGCCGACGCCGGGGCGGGTGGTGAGGAGACGGCC
CGGGTGCTGACCGGCGATCTGCTGGCCCGGATCGGGACGGTGACCGAGCTGGGGCTCGGCTATCTGAGCCTCGGCCGCAC
GGCCCCCACCCTCTCCTCCGGCGAGCTGCAACGGCTGCGGCTGGCCACGCAGTTGCGCTCCGGGCTCTTCGGCGTCGTCT
ACGTGCTGGACGAGCCGTCCGCCGGGCTGCACCCCGCCGATACGGAGTCCCTGCTCGGGGTGCTCGGCCGGCTCAAGGAG
GCCGGGAACTCGGTCTTCGTGGTGGAGCACCAGATGGATGTGGTGCGGCGGGCGGACTGGCTGGTGGATGTGGGCCCGCT
GGCCGGGGAGCACGGTGGGCGGGTGCTGCACAGCGGGCCGCCGGAGGGGCTGGCCGAGGTGCCGGAGTCGGCGACGCGGC
GGTTCCTGTTCCCCGAGGACGATCAGGACCCCGCGCCGGTACGGGAGCCGCGCACCCCCTCCGGGTGGATCCGGCTCTCC
GGGGTGGAGCGGCACAATGTGCGCGGGGTCGACGCGGCCTTCCCGCTCGGGGTGTTCACCGCGGTCACCGGGGTGTCGGG
GTCCGGCAAATCGACCCTGGTGGGCCAGGCGCTGGCCGGTGCGCTGGCGGACCGGCAGGCGGGTGAGGAGGCTGCCGGGG
CGGGTGAGCGGTTCTGCGCCTCGGTCACCGGCCTGGAGGCGGTGGACCGGCTCGTCCAGGTGGACCAGAGGCCGATCGGG
CGGACGCCCCGGTCCAACCTGGCCACCTACACCGGCCTCTTCGACACCGTACGCAAGTTGTTCGCGCGGACGGAGACGGC
GCGGGAGCGGGGCTACACGGCGGGGCGGTTCTCGTTCAACGTGAGTGGCGGGCGGTGCGAGACCTGCCAGGGCGAGGGGT
TCGTCTCGGTGGAGCTGCTCTTCCTGCCGAGTACGTACGCGCCCTGCCCGGACTGCCATGGCGCGCGCTACAACCCGGAG
ACGTTGGAGGTGATGCTGCGGGGCCTGACGATCGCTCAAGTCCTGGATCTCACCGTGGAGTCGGCGGTGGGCTTCTTCTC
CGGGACCCCGGCCGCCGAGCGCCCGCTGACCACCCTGCTGGATGTGGGGCTCGGCTATCTGCGGCTCGGGCAGCCCGCCA
CCGAGCTGTCCGGCGGTGAGGCCCAGCGGATCAAGCTCGCCTCCGAGCTCCAGCGCACCCGGCGCGGGCACACGCTGTAT
CTGCTGGACGAGCCGACGACCGGTCTGCATCCGGCCGATGTCGAGGTGCTGATGCGGCAGTTGCACGGTCTGGTGGAGGC
GCACAACACGGTGGTCGTCGTGGAGCACGACATGGCCGTGGTGGCGGGCGCGGACCACGTCATCGACATGGGGCCGGGCG
GCGGCGACCGGGGCGGGCGGATCGTGGCGTCCGGTACGCCTCAGGAGGTGGCGCGGGCAGCGGAGAGCCGTACCGCACCC
TATCTGGCGAAGGCGCTGGGGAGGTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)

ABC transporter (ABC_tran)

(489-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.358

84.777

0.368
  uvrA Streptococcus pneumoniae TIGR4

43.358

84.777

0.368
  uvrA Streptococcus pneumoniae D39

43.358

84.777

0.368