Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VR625_RS29735 Genome accession   NZ_CP142147
Coordinates   6753753..6756062 (-) Length   769 a.a.
NCBI ID   WP_345983623.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6748753..6761062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS29710 - 6749001..6749903 (+) 903 WP_345983621.1 ABC transporter substrate-binding protein -
  VR625_RS29715 - 6749910..6750983 (+) 1074 WP_345983622.1 LLM class flavin-dependent oxidoreductase -
  VR625_RS29720 - 6751131..6751925 (+) 795 WP_161030783.1 VOC family protein -
  VR625_RS29725 - 6752059..6752313 (+) 255 WP_109162605.1 WhiB family transcriptional regulator -
  VR625_RS29730 - 6752608..6753582 (-) 975 WP_109162604.1 acyl-ACP desaturase -
  VR625_RS29735 uvrA 6753753..6756062 (-) 2310 WP_345983623.1 excinuclease ABC subunit UvrA Machinery gene
  VR625_RS29740 - 6756129..6757760 (-) 1632 WP_345983624.1 ABC-F family ATP-binding cassette domain-containing protein -
  VR625_RS29745 - 6758014..6758430 (-) 417 WP_109167217.1 SsgA family sporulation/cell division regulator -
  VR625_RS29750 - 6758647..6758949 (-) 303 WP_345983625.1 YciI family protein -
  VR625_RS29755 - 6759003..6759695 (+) 693 WP_345983626.1 endonuclease V -
  VR625_RS29760 - 6759774..6759917 (+) 144 WP_202418522.1 hypothetical protein -

Sequence

Protein


Download         Length: 769 a.a.        Molecular weight: 82715.58 Da        Isoelectric Point: 6.3732

>NTDB_id=839984 VR625_RS29735 WP_345983623.1 6753753..6756062(-) (uvrA) [Streptomyces sp. DSS69]
MDHSTATNHHQPTVRPIAITGAHENNLRDVSLTLPKGRITVFTGVSGSGKSSVVFDTIAVESQRQLNETFTSFLRNRLPK
YERPRAESMEDLSVAVVIDQRPLGGNVRSTVGTATDIWSVLRVLFSRYGAPSAGGASAYSFNDPAGMCPECDGVGRTVRL
DLDRAVDWSKSLNEGALLLPGLSVGSWEWSLYGGSGRFDNDLPLSDYGEEERRLLLYGSGFTVRLDLRTGSADMRFEGVV
TRFERLYLKRDTASLSDKRRAAADRFTVERVCGSCGGARLNAAALATRVDGLSPADYGRMEVADLVGVLARIDDPVGGPI
AAAARERLERLVGIGLGYLSLDRETTTLSGGEGQRLKMVRHLGSSLTGLTFVFDEPSVGLHPRDVGRLGDLLVRLRDKGN
TVLVVEHDPDVMAVADHIVDMGPRAGSEGGHVVFEGPFDRLRAADTLTGRCLRQRTPVKSEFRSPTGHLPVRGAELHNLK
GLDVSFPTGVLTVVTGVAGSGKSTLVSEVFTAAHPQAVVIDQSAITASSRSTPASYIGALDAIRKVFARENGVDAGLFSF
NSAGACPGCSGRGVISTDLAFMDPVTTTCQECEGRRFHDDVLKHRVGGRSIVDVLEMTAAQAVGLFEDRALLRKLRTLDE
VDLTYLTLGQPLSTLSGGERQRIKLATQLHRTSSVYVLDEPTTGLHLADTGALVDLLDRLVDAGNTVICVEHNLEVVKRA
DRVVDLGPDGGKKGGELVFEGTPQELLADPVSVTARYLRRDLGLPEEPR

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=839984 VR625_RS29735 WP_345983623.1 6753753..6756062(-) (uvrA) [Streptomyces sp. DSS69]
ATGGATCACAGCACCGCCACGAACCACCACCAGCCGACCGTGCGCCCCATCGCCATCACCGGGGCGCACGAGAACAATCT
GCGCGATGTCTCCCTCACCCTGCCGAAGGGCCGGATCACCGTCTTCACGGGGGTCTCCGGTTCGGGGAAGTCGTCGGTCG
TCTTCGACACGATCGCCGTGGAGTCCCAGCGGCAGCTGAACGAGACCTTCACCTCGTTCCTGCGGAACCGGCTGCCCAAG
TACGAGCGGCCACGGGCCGAGTCCATGGAGGACCTGTCCGTGGCCGTCGTCATCGACCAGCGGCCGCTCGGCGGCAACGT
CCGGTCGACCGTGGGCACGGCGACGGACATCTGGTCGGTGCTCCGGGTGCTGTTCTCCCGGTACGGCGCCCCGAGCGCCG
GCGGGGCGAGCGCGTACTCCTTCAACGACCCGGCGGGGATGTGCCCGGAGTGCGACGGGGTGGGGCGGACGGTCCGCCTC
GATCTGGACCGGGCGGTGGACTGGTCGAAGTCGCTGAACGAGGGGGCGCTGCTGCTGCCCGGGCTCTCGGTGGGCAGCTG
GGAGTGGAGCCTGTACGGCGGGTCGGGGCGGTTCGACAACGATCTGCCGCTCTCCGATTACGGCGAGGAGGAGCGCCGAC
TCCTGCTGTACGGATCCGGGTTCACCGTCCGCCTCGACCTGCGCACGGGCTCGGCGGACATGCGGTTCGAGGGGGTGGTG
ACCCGGTTCGAGCGGCTCTACCTCAAGCGCGACACGGCGTCGCTGTCGGACAAGCGGCGTGCGGCGGCCGACCGGTTCAC
CGTCGAGAGGGTCTGCGGCTCCTGCGGCGGCGCGCGGCTGAACGCGGCGGCGCTCGCCACCCGCGTCGACGGGCTCTCGC
CCGCCGACTACGGGCGGATGGAGGTCGCCGATCTCGTCGGCGTACTGGCGCGGATCGATGACCCGGTGGGCGGCCCGATC
GCGGCGGCGGCCCGTGAGCGGCTGGAGCGGCTCGTGGGGATCGGGCTGGGATACCTCAGCCTGGACCGGGAGACGACCAC
GCTCTCGGGCGGCGAGGGGCAGCGGCTCAAGATGGTGCGCCATCTGGGGAGCTCCCTGACCGGGCTGACCTTCGTCTTCG
ACGAGCCGAGCGTCGGGCTGCACCCCAGGGACGTCGGGCGGCTCGGCGACCTGCTGGTACGGCTGCGCGACAAGGGCAAC
ACGGTGCTGGTGGTGGAGCACGACCCGGATGTGATGGCGGTCGCCGACCACATCGTCGACATGGGGCCGCGCGCCGGTTC
GGAGGGCGGCCACGTCGTCTTCGAGGGGCCGTTCGACCGGCTGCGTGCGGCGGACACGCTCACCGGCCGCTGTCTGCGTC
AACGCACCCCCGTCAAGAGCGAGTTCCGCTCCCCCACCGGACATCTCCCGGTCCGGGGCGCCGAGCTGCACAACCTCAAG
GGGCTGGACGTGTCGTTCCCCACCGGGGTGCTGACCGTGGTGACGGGGGTGGCGGGTTCGGGCAAGTCGACGCTGGTCTC
GGAGGTGTTCACGGCGGCCCACCCGCAGGCGGTGGTCATCGACCAGAGCGCGATCACCGCCTCCTCCCGCTCCACCCCGG
CCTCGTACATCGGTGCGCTGGACGCCATCCGCAAGGTCTTCGCGCGGGAGAACGGTGTCGACGCGGGGCTGTTCAGCTTC
AACTCGGCCGGCGCCTGCCCGGGCTGCTCGGGCCGTGGGGTGATCTCCACCGACCTGGCGTTCATGGACCCGGTGACCAC
GACCTGCCAGGAGTGCGAGGGCCGCCGGTTCCACGACGACGTCCTGAAACACCGGGTCGGCGGCCGGTCCATCGTGGACG
TGCTGGAGATGACGGCGGCACAGGCGGTCGGGCTCTTCGAGGACCGGGCGCTGCTGCGGAAGCTGCGCACCCTGGACGAG
GTCGACCTCACCTATCTGACGCTCGGGCAGCCCCTCAGCACCCTCTCCGGCGGTGAGCGCCAGCGGATCAAGCTCGCCAC
CCAGCTGCACCGGACCTCCAGCGTCTACGTCCTGGACGAGCCGACGACCGGGCTGCACCTGGCCGACACCGGGGCGCTGG
TGGACCTGCTCGACCGGCTGGTCGACGCGGGGAACACGGTGATCTGTGTGGAGCACAACCTGGAGGTGGTGAAGCGGGCG
GACCGGGTCGTCGACCTCGGTCCGGACGGCGGGAAGAAGGGCGGCGAGCTGGTCTTCGAGGGGACCCCGCAGGAGCTGCT
GGCGGACCCCGTCTCGGTTACCGCCCGGTATCTGCGCCGGGACCTCGGCCTGCCCGAGGAGCCCCGCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(161-254)

ABC transporter (ABC_tran)

(479-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

37.731

98.57

0.372
  uvrA Streptococcus pneumoniae TIGR4

37.731

98.57

0.372
  uvrA Streptococcus pneumoniae D39

37.731

98.57

0.372