Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VR625_RS22785 Genome accession   NZ_CP142147
Coordinates   5103434..5104411 (+) Length   325 a.a.
NCBI ID   WP_109163773.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5098434..5109411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS22765 - 5098469..5099611 (+) 1143 WP_345983088.1 dipeptide ABC transporter ATP-binding protein -
  VR625_RS22770 - 5099777..5101408 (+) 1632 WP_345983089.1 ABC transporter substrate-binding protein -
  VR625_RS22775 - 5101527..5102450 (+) 924 WP_109163775.1 ABC transporter permease -
  VR625_RS22780 - 5102443..5103420 (+) 978 WP_109163774.1 ABC transporter permease -
  VR625_RS22785 amiE 5103434..5104411 (+) 978 WP_109163773.1 ABC transporter ATP-binding protein Regulator
  VR625_RS22790 - 5104401..5105690 (+) 1290 WP_109163772.1 dipeptide ABC transporter ATP-binding protein -
  VR625_RS22795 - 5105722..5106192 (-) 471 WP_345983090.1 DUF3515 family protein -
  VR625_RS22800 - 5106444..5108570 (-) 2127 WP_109163770.1 prolyl oligopeptidase family serine peptidase -
  VR625_RS22805 - 5108745..5108939 (+) 195 WP_109163769.1 hypothetical protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35788.66 Da        Isoelectric Point: 6.7672

>NTDB_id=839965 VR625_RS22785 WP_109163773.1 5103434..5104411(+) (amiE) [Streptomyces sp. DSS69]
MLLEVRDLHVEFHTREGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGKITGGEILFKGQDLLKLKG
EERRKIRGQEMAMIFQDALSSLNPVLTVGEQLGEMFVVHRGMSRKDARAKAVELMDRVRIPAAKERVGQYPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYKAPAHPYTKGLLRSIPRLDQKGQELYAIKGLPPNLLHIPPGCAFNPRCPMAQDVCRSEVPPLYEVDEQRRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=839965 VR625_RS22785 WP_109163773.1 5103434..5104411(+) (amiE) [Streptomyces sp. DSS69]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGCGAGGGCGTGGCCAAGGCCGTCAACGGGGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCCGTCCTCGGGGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCCGTCATGG
GCATCCTCGACATGCCGCCCGGGAAGATCACCGGCGGCGAGATCCTCTTCAAGGGCCAGGACCTGCTGAAACTCAAGGGG
GAGGAGCGGCGCAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTCCTCAC
CGTGGGCGAGCAGCTCGGCGAGATGTTCGTCGTCCACCGGGGCATGTCCCGCAAGGACGCGCGGGCCAAGGCCGTGGAGC
TGATGGACCGGGTGCGCATCCCGGCGGCGAAGGAGCGGGTCGGGCAGTATCCCCACCAGTTCTCCGGCGGGATGCGCCAG
CGCATCATGATCGCGATGGCGCTGGCCCTGGAGCCGTCCCTGATCATCGCGGACGAGCCGACCACCGCCCTGGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTCGCGGAGCTCCAGCGCGAGCTGAACATGGGCCTCATCCTGATCACCCACGACC
TCGGCGTGGTCGCCGACGTGGCCGACAAGATCGCGGTGATGTACGCGGGGCGGATCGTGGAGACCGCCCCCGTCCACGAG
ATCTACAAGGCGCCCGCCCACCCGTACACCAAGGGCCTCCTCCGGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGCCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCGTTCAACCCGCGCTGCCCGATGGCCC
AGGACGTGTGCCGCAGCGAGGTGCCGCCGCTCTACGAGGTGGACGAACAGCGCCGCAGCGCCTGCCACTTCTGGAAGGAG
ACTCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.032

95.385

0.468
  oppD Streptococcus mutans UA159

48.089

96.615

0.465
  amiE Streptococcus thermophilus LMG 18311

48.065

95.385

0.458
  amiE Streptococcus thermophilus LMD-9

48.065

95.385

0.458