Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VR625_RS22760 Genome accession   NZ_CP142147
Coordinates   5097418..5098476 (+) Length   352 a.a.
NCBI ID   WP_109163778.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5092418..5103476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS22745 - 5093805..5095433 (+) 1629 WP_109163781.1 ABC transporter substrate-binding protein -
  VR625_RS22750 - 5095528..5096454 (+) 927 WP_109163780.1 ABC transporter permease -
  VR625_RS22755 - 5096447..5097406 (+) 960 WP_345983087.1 ABC transporter permease -
  VR625_RS22760 amiE 5097418..5098476 (+) 1059 WP_109163778.1 ABC transporter ATP-binding protein Regulator
  VR625_RS22765 - 5098469..5099611 (+) 1143 WP_345983088.1 dipeptide ABC transporter ATP-binding protein -
  VR625_RS22770 - 5099777..5101408 (+) 1632 WP_345983089.1 ABC transporter substrate-binding protein -
  VR625_RS22775 - 5101527..5102450 (+) 924 WP_109163775.1 ABC transporter permease -
  VR625_RS22780 - 5102443..5103420 (+) 978 WP_109163774.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38783.76 Da        Isoelectric Point: 6.2864

>NTDB_id=839964 VR625_RS22760 WP_109163778.1 5097418..5098476(+) (amiE) [Streptomyces sp. DSS69]
MTTMEKTANVPAPRGEEDHQGPLLEVRDLHVEFHTREGVAKAVNGVNYTVDAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPQGEILFRGKDMLTMAEEERRKIRGRKVAMIFQDALSSLNPVLTVGYQLGEMFRVHLGMSKKDAKLKAIELMDRVR
IPAAKERVDDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYSRPSHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPSGCAFNPRCPKAEDICRT
DVPPLHPVTERDGTDLPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=839964 VR625_RS22760 WP_109163778.1 5097418..5098476(+) (amiE) [Streptomyces sp. DSS69]
GTGACCACCATGGAAAAAACCGCGAACGTCCCCGCCCCTCGCGGCGAGGAGGACCACCAGGGCCCGCTGCTCGAAGTCCG
GGACCTGCACGTCGAGTTCCACACCCGCGAGGGCGTCGCCAAGGCCGTCAACGGTGTCAACTACACCGTCGACGCCGGTG
AGACGCTGGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCCCAGGCGATCATGGGCATCCTCGACATGCCG
CCGGGCCGCATCCCGCAGGGGGAGATCCTCTTCCGCGGCAAGGACATGCTCACCATGGCCGAGGAGGAGCGCCGCAAGAT
CCGGGGCCGCAAGGTCGCGATGATCTTCCAGGACGCCCTCTCCTCGCTCAACCCGGTGCTGACCGTGGGCTACCAGCTCG
GCGAGATGTTCCGCGTCCACCTGGGCATGTCCAAGAAGGACGCCAAGCTCAAGGCCATCGAACTGATGGACCGGGTGCGC
ATTCCGGCGGCCAAGGAGCGGGTCGACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTCGCCCTGGAGCCCGACCTGATCATCGCGGACGAGCCGACCACCGCCCTGGACGTCACCGTCCAGGCCCAGGTCA
TGGACCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGGCTCATCCTGATCACCCACGACCTCGGTGTGGTCGCCGAC
GTCGCGGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTGGAGACCGCTCCGGTGCACGAGCTCTACAGCCGCCCGTC
GCACCCGTACACCCGCGGTCTCCTCGACTCGATCCCGCGTCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTGACGCGTATCCCCTCGGGCTGCGCGTTCAACCCCCGCTGCCCCAAGGCCGAGGACATCTGCCGTACG
GATGTCCCCCCGCTGCACCCGGTCACCGAGCGCGACGGCACCGACCTGCCGGGCCGCGGAAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.089

89.205

0.429
  amiE Streptococcus thermophilus LMD-9

48.089

89.205

0.429
  amiE Streptococcus salivarius strain HSISS4

48.089

89.205

0.429
  oppD Streptococcus mutans UA159

48.052

87.5

0.42