Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VR625_RS18985 Genome accession   NZ_CP142147
Coordinates   4287366..4288016 (-) Length   216 a.a.
NCBI ID   WP_345982826.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4282366..4293016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS18950 - 4282382..4283161 (-) 780 WP_345982822.1 rhomboid-like protein -
  VR625_RS18955 - 4283196..4284146 (+) 951 WP_345982823.1 aminoglycoside phosphotransferase family protein -
  VR625_RS18960 - 4284357..4284464 (-) 108 Protein_3725 oxidoreductase -
  VR625_RS18965 - 4284560..4285777 (-) 1218 WP_345982824.1 NAD(P)-binding protein -
  VR625_RS18970 - 4285895..4286605 (+) 711 WP_225976899.1 pentapeptide repeat-containing protein -
  VR625_RS18975 - 4286621..4287118 (-) 498 WP_109164387.1 hypothetical protein -
  VR625_RS18980 - 4287174..4287341 (+) 168 WP_345982825.1 hypothetical protein -
  VR625_RS18985 vraR 4287366..4288016 (-) 651 WP_345982826.1 response regulator transcription factor Regulator
  VR625_RS18990 - 4288013..4289305 (-) 1293 WP_345984198.1 sensor histidine kinase -
  VR625_RS18995 - 4289556..4290113 (+) 558 WP_109164384.1 heme-binding protein -
  VR625_RS19000 - 4290150..4290746 (+) 597 WP_109164383.1 ankyrin repeat domain-containing protein -
  VR625_RS19005 - 4290824..4292020 (+) 1197 WP_345984199.1 YncE family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22904.29 Da        Isoelectric Point: 5.1153

>NTDB_id=839960 VR625_RS18985 WP_345982826.1 4287366..4288016(-) (vraR) [Streptomyces sp. DSS69]
MTGQGPQTPPAPVRILLCDDHVVVRAGLLALLGSEPDIEVVGEAGSGEEAVVLAARLTPDVVLMDLQLGEGIDGVEATRR
IAADGTVHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTILSAPVASRVMARMRSPRPTLTDRER
DILAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 651 bp        

>NTDB_id=839960 VR625_RS18985 WP_345982826.1 4287366..4288016(-) (vraR) [Streptomyces sp. DSS69]
ATGACCGGCCAAGGCCCGCAGACGCCCCCCGCCCCCGTACGCATCCTGCTCTGCGACGACCACGTGGTCGTCCGCGCCGG
CCTGCTGGCCCTCCTCGGCAGCGAACCTGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCGGTGGTGCTCG
CCGCCCGCCTCACCCCGGACGTCGTCCTGATGGACCTCCAGCTCGGCGAGGGCATCGACGGCGTCGAGGCGACCCGCCGC
ATCGCCGCCGACGGCACGGTCCACGTCCTGGTGCTGACCACGTACGACACCGACGCCGACATCACCCGGGCCATCGAGGC
GGGCGCCACCGGCTACCTGCTGAAGGCGGAACGCCCCGAGGAACTCTTCGCCGCCATCCGCTCGGCCGCCCAGGGCCGCA
CCATCCTCTCGGCCCCCGTGGCCAGCCGGGTCATGGCCCGGATGCGCAGCCCCCGCCCCACCCTCACCGACCGCGAACGC
GACATCCTGGCCCAGCTCTCCCAGGGCCTCGGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACGGTCAA
GACGCACCTGGGCCGGATCTACGACAAACTCGGCGTCGACACCCGCGCGGGCGCGGTGGCGGTGGCGAAGGAGCAGCGCC
TGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)

Response regulator receiver domain (Response_reg)

(15-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.13

95.833

0.375