Detailed information NTG0839954

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VR625_RS15740
• Genome accession: NZ_CP142147
• Coordinates: 3575626..3578211 (-)
• Length: 861 a.a.
• NCBI ID: WP_161031220.1
• Uniprot ID: -
• Organism: Streptomyces sp. DSS69
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3570626..3583211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VR625_RS15720	-	3572311..3572832 (-)	522	WP_161031218.1	DUF2617 family protein	-
VR625_RS15725	-	3573184..3573507 (-)	324	WP_109164855.1	hypothetical protein	-
VR625_RS15730	-	3573667..3574830 (+)	1164	WP_345982547.1	pyridoxal phosphate-dependent aminotransferase	-
VR625_RS15735	-	3574922..3575473 (-)	552	WP_109164853.1	YbjN domain-containing protein	-
VR625_RS15740	clpC	3575626..3578211 (-)	2586	WP_161031220.1	ATP-dependent chaperone ClpB	Regulator
VR625_RS15745	-	3578388..3578789 (+)	402	WP_109167423.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
VR625_RS15750	-	3578908..3579228 (-)	321	WP_015609572.1	hypothetical protein	-
VR625_RS15755	-	3579592..3580596 (+)	1005	WP_109164851.1	helix-turn-helix transcriptional regulator	-
VR625_RS15760	-	3580759..3581337 (+)	579	Protein_3108	helix-turn-helix transcriptional regulator	-
VR625_RS15765	-	3581411..3581869 (-)	459	WP_109164850.1	helix-turn-helix domain-containing protein	-
VR625_RS15770	dnaJ	3581871..3583064 (-)	1194	WP_161031221.1	molecular chaperone DnaJ	-

Sequence

Protein

• Length: 861 a.a.
• Molecular weight: 94019.41 Da
• Isoelectric Point: 4.6725

>NTDB_id=839954 VR625_RS15740 WP_161031220.1 3575626..3578211(-) (clpC) [Streptomyces sp. DSS69]
MDAELTNKSRDAINAATDRAVKDGHPDLTPAHLLLALLAGEDNENITDLLAAVEADQAVVRGETERLLGTLPSVTGSTVA
PPQPNRELLAVIQDAAQRAKELGDEYLSTEHLLIGIAAKGGRAGEILDGQGAGAKKLLAAFETSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAARDGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPLEIDELQRSVDRLRMEELALKNESDAASKQRLEKLRRDLADREEELRGLNARWEKEKQGLNRVGELKER
LDELRGQAERAQRDGDFDAASKLLYGEIPGLERELEEAAEAEQEASKDTMVKEEVGPDDIADVVGAWTGIPAGRLLEGET
QKLLRMESELGKRLIGQSEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVL
TSNLGSQFLMDPLVKPEVKKEQVLEVVRASFKPEFVNRLDDLVVFSALSGDELAHIAKLQVDRLAARLADRRLTLDVTPE
ALAWLAEEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEVTDGDTVRVDRAEDGLIVGPAA

Nucleotide

• Length: 2586 bp

>NTDB_id=839954 VR625_RS15740 WP_161031220.1 3575626..3578211(-) (clpC) [Streptomyces sp. DSS69]
GTGGACGCCGAGCTGACCAACAAGAGCCGGGACGCCATCAACGCGGCCACCGACAGGGCCGTGAAGGACGGGCACCCCGA
TCTCACCCCCGCCCATCTGCTGCTCGCACTCCTGGCGGGCGAGGACAACGAGAACATCACCGACCTGCTCGCCGCCGTCG
AGGCCGACCAGGCCGTCGTGCGCGGCGAGACCGAGCGGCTGCTCGGGACCCTGCCCAGCGTCACCGGCTCCACCGTCGCC
CCGCCGCAGCCCAACCGCGAGCTGCTGGCCGTCATCCAGGACGCGGCCCAGCGGGCGAAGGAGCTGGGGGACGAATACCT
CTCCACCGAGCATCTGCTCATCGGGATCGCCGCGAAGGGCGGGCGCGCCGGTGAGATCCTCGACGGGCAGGGTGCCGGTG
CGAAGAAGCTGCTGGCCGCATTCGAGACGAGCAGGGGAGGGCGCCGCGTGACCACACCCGACCCGGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACGGCCGCCGCGCGCGACGGCAAGCTGGACCCGGTCATCGGCCGCGACCAGGA
GATCCGCCGCGTCGTGCAGGTGCTGTCGCGCCGCACGAAGAACAACCCGGTGCTCATCGGTGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAGGGGCTCGCCCAGCGCATCGTCAAGGGGGACGTCCCCGAGAGCCTGAAGAACAAGCGGCTCGTCTCG
CTGGACCTCGGCGCGATGGTCGCGGGTGCTAAGTACCGCGGCGAGTTCGAGGAGCGCCTGAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGCCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGCGCGGGCGGTGACTCCG
CCATGGACGCGGGCAACATGCTCAAGCCGATGCTGGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACCACGCTGGACGAG
TACCGCGAGCGCATCGAGAAGGACCCGGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGTCCGTCGAGGA
CACCATCGCCATCCTCCGTGGTCTCAAGGGCCGTTACGAGGCCCACCACAAGGTCCAGATCGCGGACTCGGCGCTCGTCG
CCGCGGCCACCCTCTCCGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCCATCGACCTGGTCGACGAGGCCGCC
TCCCGGCTGCGGATGGAGATCGACTCCTCGCCCCTGGAGATCGACGAACTCCAGCGCTCCGTCGACCGGTTGCGCATGGA
GGAGCTGGCCCTCAAGAACGAGTCCGACGCCGCCTCCAAGCAGCGCCTGGAGAAGCTGCGCCGCGACCTCGCCGACAGGG
AGGAGGAGCTGCGCGGCCTCAACGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGGGTCGGTGAGCTGAAGGAGCGC
CTGGACGAGCTGCGCGGACAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACGCCGCCTCCAAGCTGCTGTACGGGGA
GATCCCCGGTCTGGAGCGGGAGTTGGAGGAGGCCGCCGAGGCGGAGCAGGAGGCGTCCAAGGACACCATGGTCAAGGAGG
AGGTCGGCCCGGACGACATCGCGGACGTCGTCGGCGCCTGGACCGGCATCCCGGCCGGGCGGCTGCTGGAGGGCGAGACC
CAGAAGCTGCTGCGGATGGAGTCCGAGCTGGGCAAGCGGCTGATCGGGCAGAGCGAGGCCGTGCAGGCCGTCTCCGACGC
CGTACGCCGGACCAGGGCTGGCATCGCCGACCCCGACCGGCCCACCGGGTCGTTCCTCTTCCTCGGGCCCACCGGCGTGG
GTAAGACCGAGCTGGCCAAGGCGCTCGCGGACTTCCTCTTCGACGACGAGCGGGCCATGATCCGCATCGACATGAGCGAG
TACGGCGAGAAGCACAGCGTCGCCCGGCTCGTCGGCGCCCCGCCCGGTTACGTCGGGTACGAGGAGGGCGGCCAGCTCAC
CGAGGCCGTCCGCCGCCGCCCGTACAGCGTCGTGCTCCTGGACGAGGTGGAGAAGGCCCACCCCGAGGTCTTCGACATCC
TGCTCCAGGTCCTCGACGACGGGCGGCTCACCGACGGCCAGGGCCGCACGGTGGACTTCCGCAACACCATCCTCGTCCTC
ACCTCCAACCTCGGCAGCCAGTTCCTCATGGACCCCCTGGTCAAGCCCGAGGTCAAGAAGGAGCAGGTGCTGGAGGTGGT
GCGGGCCTCCTTCAAGCCGGAGTTCGTCAACCGGCTGGACGACCTGGTGGTCTTCTCGGCGCTCTCCGGCGACGAGCTGG
CCCACATCGCCAAGCTCCAGGTCGACCGCCTGGCGGCCCGCCTGGCCGACCGCCGCCTCACCCTGGACGTCACCCCCGAG
GCCCTGGCCTGGCTCGCCGAGGAGGGCAACGACCCGGCGTACGGGGCGCGCCCGCTGCGCCGCCTCATCCAGACGGCGAT
CGGCGACCGGCTCGCCAAGGAGATCCTCTCCGGCGAGGTCACGGACGGTGACACCGTACGGGTGGACCGGGCCGAGGACG
GCCTGATCGTCGGCCCGGCCGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• AAA lid domain (AAA_lid_9) (344-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44	100	0.447
clpC	Lactococcus lactis subsp. cremoris KW2	47.25	82.346	0.389
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.469	82.23	0.382