Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VR625_RS14605 | Genome accession | NZ_CP142147 |
| Coordinates | 3266907..3269435 (-) | Length | 842 a.a. |
| NCBI ID | WP_109165017.1 | Uniprot ID | - |
| Organism | Streptomyces sp. DSS69 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3261907..3274435
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VR625_RS14580 | cseB | 3262134..3262847 (+) | 714 | WP_109165021.1 | two-component system response regulator CseB | - |
| VR625_RS14585 | cseC | 3263005..3264342 (+) | 1338 | WP_109165020.1 | two-component system sensor histidine kinase CseC | - |
| VR625_RS14590 | - | 3264646..3265362 (-) | 717 | WP_345982437.1 | M23 family metallopeptidase | - |
| VR625_RS14595 | - | 3265821..3266051 (+) | 231 | WP_345982438.1 | hypothetical protein | - |
| VR625_RS14600 | - | 3266048..3266368 (+) | 321 | WP_345982439.1 | hypothetical protein | - |
| VR625_RS14605 | clpC | 3266907..3269435 (-) | 2529 | WP_109165017.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VR625_RS14610 | - | 3269886..3270509 (+) | 624 | WP_161033000.1 | SCO3374 family protein | - |
| VR625_RS14615 | - | 3270488..3270823 (-) | 336 | WP_003968298.1 | Lsr2 family protein | - |
| VR625_RS14620 | - | 3270978..3271547 (-) | 570 | WP_202419443.1 | amino-acid N-acetyltransferase | - |
| VR625_RS14625 | - | 3271557..3272051 (-) | 495 | WP_345982440.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| VR625_RS14630 | - | 3272161..3272340 (-) | 180 | WP_093693369.1 | hypothetical protein | - |
| VR625_RS14635 | - | 3272434..3273027 (-) | 594 | WP_161033030.1 | hypothetical protein | - |
| VR625_RS14640 | - | 3273202..3273999 (-) | 798 | WP_109165013.1 | type III pantothenate kinase | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 93109.41 Da Isoelectric Point: 5.9178
>NTDB_id=839950 VR625_RS14605 WP_109165017.1 3266907..3269435(-) (clpC) [Streptomyces sp. DSS69]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKETAAAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTNYERMKVKVNEELKQHFRPEFLNRVDDTVVFHQL
TEEDIIQIVDLMLAKVDERLKDRDMGIELSSEAKSLLAKKGYDPVMGARPLRRTIQREIEDILSEKILFGELRPGHIVVV
GVEGEGDDKKFSFRGEEKSALPDVPPIEQAAGGAGPNLTKDA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKETAAAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTNYERMKVKVNEELKQHFRPEFLNRVDDTVVFHQL
TEEDIIQIVDLMLAKVDERLKDRDMGIELSSEAKSLLAKKGYDPVMGARPLRRTIQREIEDILSEKILFGELRPGHIVVV
GVEGEGDDKKFSFRGEEKSALPDVPPIEQAAGGAGPNLTKDA
Nucleotide
Download Length: 2529 bp
>NTDB_id=839950 VR625_RS14605 WP_109165017.1 3266907..3269435(-) (clpC) [Streptomyces sp. DSS69]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGGCAGCAGGCTCCTTCCGGGCACATCCCCTTC
ACCCCGCGAGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGACCTGAACCGGG
TCCGGCAGCAGGTCATCCAGCTGCTTTCGGGCTACTCGGGCGGCAAGGAGACGGCGGCCGCGGGCGGCCCCGCGGAGGGC
ACCCCCTCCACCTCCCTGGTGCTCGACCAGTTCGGCCGGAATCTCACCCAGGCCGCTCGTGAATCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAACAACCCGGTCCTCATCGGCG
AGCCCGGCGTCGGCAAGACGGCGGTCGTTGAGGGCCTGGCCCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGTTCGCGGTACCGGGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACGCTCGTGGGTGCGGGTG
CCGCCGAGGGCGCCATCGACGCGGCTTCGATCCTGAAGCCGATGCTGGCGCGCGGTGAGCTCCAGACCATCGGTGCCACC
ACCCTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCC
GTCGCTGCCGCACACCATCGAGATCCTGAAGGGCCTGCGCGACCGTTACGAGGCCCACCACCGGGTCTCCATCACGGACG
AGGCCCTCGTCCAGGCCGCGACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATC
GACGAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGTGAGTTCGACGAGAAGATCGCGGG
TGTCCGCCGCGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCGGCTTCCCTCCGCGACAAGGAGAAGCAGC
TGCTGGCGGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTC
ATCGCCGAAGTTCTGGCCACGGCCACCGGTATCCCGGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTGCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGGCAGAAGGACGCCATCAAGGCCCTCTCGCAGGCGATCCGCCGTACGCGAG
CCGGTCTGAAGGACCCCAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACGGAGCTCTCC
AAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC
GGTTTCCCGCCTCTTCGGTTCGCCCCCCGGCTACGTGGGTTACGAAGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGATATCTTCAATTCCCTGCTCCAGATTCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACGTCAAGACCAACTACGAGCGCATGAAGGTCA
AGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCGGAATTCCTCAACCGTGTCGACGACACGGTGGTCTTCCACCAGCTG
ACCGAGGAAGACATCATCCAGATCGTCGACCTCATGCTCGCCAAGGTCGACGAGCGGCTCAAGGACCGGGACATGGGCAT
CGAGCTCAGCTCCGAGGCCAAGTCGCTCCTGGCGAAGAAGGGCTACGACCCCGTGATGGGCGCCCGGCCGCTGCGCCGGA
CGATCCAGCGCGAGATCGAGGACATCCTCTCCGAGAAGATCCTCTTCGGTGAGCTGCGCCCCGGTCACATCGTGGTCGTC
GGCGTCGAGGGCGAGGGCGACGACAAGAAGTTCTCGTTCCGCGGCGAGGAGAAGTCGGCTCTGCCCGACGTCCCCCCGAT
CGAGCAGGCGGCAGGCGGCGCCGGCCCGAACCTGACGAAGGACGCGTGA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGGCAGCAGGCTCCTTCCGGGCACATCCCCTTC
ACCCCGCGAGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGACCTGAACCGGG
TCCGGCAGCAGGTCATCCAGCTGCTTTCGGGCTACTCGGGCGGCAAGGAGACGGCGGCCGCGGGCGGCCCCGCGGAGGGC
ACCCCCTCCACCTCCCTGGTGCTCGACCAGTTCGGCCGGAATCTCACCCAGGCCGCTCGTGAATCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAACAACCCGGTCCTCATCGGCG
AGCCCGGCGTCGGCAAGACGGCGGTCGTTGAGGGCCTGGCCCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGTTCGCGGTACCGGGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACGCTCGTGGGTGCGGGTG
CCGCCGAGGGCGCCATCGACGCGGCTTCGATCCTGAAGCCGATGCTGGCGCGCGGTGAGCTCCAGACCATCGGTGCCACC
ACCCTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCC
GTCGCTGCCGCACACCATCGAGATCCTGAAGGGCCTGCGCGACCGTTACGAGGCCCACCACCGGGTCTCCATCACGGACG
AGGCCCTCGTCCAGGCCGCGACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATC
GACGAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGTGAGTTCGACGAGAAGATCGCGGG
TGTCCGCCGCGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCGGCTTCCCTCCGCGACAAGGAGAAGCAGC
TGCTGGCGGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTC
ATCGCCGAAGTTCTGGCCACGGCCACCGGTATCCCGGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTGCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGGCAGAAGGACGCCATCAAGGCCCTCTCGCAGGCGATCCGCCGTACGCGAG
CCGGTCTGAAGGACCCCAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACGGAGCTCTCC
AAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC
GGTTTCCCGCCTCTTCGGTTCGCCCCCCGGCTACGTGGGTTACGAAGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGATATCTTCAATTCCCTGCTCCAGATTCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACGTCAAGACCAACTACGAGCGCATGAAGGTCA
AGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCGGAATTCCTCAACCGTGTCGACGACACGGTGGTCTTCCACCAGCTG
ACCGAGGAAGACATCATCCAGATCGTCGACCTCATGCTCGCCAAGGTCGACGAGCGGCTCAAGGACCGGGACATGGGCAT
CGAGCTCAGCTCCGAGGCCAAGTCGCTCCTGGCGAAGAAGGGCTACGACCCCGTGATGGGCGCCCGGCCGCTGCGCCGGA
CGATCCAGCGCGAGATCGAGGACATCCTCTCCGAGAAGATCCTCTTCGGTGAGCTGCGCCCCGGTCACATCGTGGTCGTC
GGCGTCGAGGGCGAGGGCGACGACAAGAAGTTCTCGTTCCGCGGCGAGGAGAAGTCGGCTCTGCCCGACGTCCCCCCGAT
CGAGCAGGCGGCAGGCGGCGCCGGCCCGAACCTGACGAAGGACGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.644 |
95.368 |
0.588 |
| clpC | Streptococcus mutans UA159 |
44.699 |
98.575 |
0.441 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.494 |
98.575 |
0.429 |
| clpC | Streptococcus thermophilus LMD-9 |
43.546 |
98.456 |
0.429 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.335 |
96.437 |
0.428 |
| clpC | Streptococcus pneumoniae Rx1 |
44.154 |
95.487 |
0.422 |
| clpC | Streptococcus pneumoniae D39 |
44.154 |
95.487 |
0.422 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.905 |
95.487 |
0.419 |
| clpE | Streptococcus mutans UA159 |
53.994 |
74.347 |
0.401 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.201 |
75.534 |
0.394 |
| clpE | Streptococcus pneumoniae R6 |
52.044 |
75.534 |
0.393 |
| clpE | Streptococcus pneumoniae Rx1 |
52.044 |
75.534 |
0.393 |
| clpE | Streptococcus pneumoniae D39 |
52.044 |
75.534 |
0.393 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.326 |
76.128 |
0.391 |