Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QPR73_RS19555 Genome accession   NZ_CP126792
Coordinates   4061525..4062958 (+) Length   477 a.a.
NCBI ID   WP_058674772.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain Ehh_19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4056525..4067958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR73_RS19525 (QPR73_19500) - 4057092..4058069 (+) 978 WP_003861852.1 calcium/sodium antiporter -
  QPR73_RS19530 (QPR73_19505) kdsD 4058083..4059069 (+) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  QPR73_RS19535 (QPR73_19510) kdsC 4059084..4059650 (+) 567 WP_003861856.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QPR73_RS19540 (QPR73_19515) lptC 4059647..4060222 (+) 576 WP_003861858.1 LPS export ABC transporter periplasmic protein LptC -
  QPR73_RS19545 (QPR73_19520) lptA 4060191..4060745 (+) 555 WP_003861860.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QPR73_RS19550 (QPR73_19525) lptB 4060752..4061477 (+) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  QPR73_RS19555 (QPR73_19530) rpoN/rpoN1 4061525..4062958 (+) 1434 WP_058674772.1 RNA polymerase factor sigma-54 Machinery gene
  QPR73_RS19560 (QPR73_19535) hpf 4062981..4063268 (+) 288 WP_003861866.1 ribosome hibernation promoting factor -
  QPR73_RS19565 (QPR73_19540) ptsN 4063351..4063842 (+) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QPR73_RS19570 (QPR73_19545) rapZ 4063888..4064742 (+) 855 WP_003861870.1 RNase adapter RapZ -
  QPR73_RS19575 (QPR73_19550) npr 4064739..4065011 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  QPR73_RS19580 (QPR73_19555) mtgA 4065051..4065776 (-) 726 WP_032660497.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QPR73_RS19585 (QPR73_19560) elbB 4065773..4066426 (-) 654 WP_111946910.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54041.92 Da        Isoelectric Point: 4.3524

>NTDB_id=839930 QPR73_RS19555 WP_058674772.1 4061525..4062958(+) (rpoN/rpoN1) [Enterobacter hormaechei strain Ehh_19]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDAIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=839930 QPR73_RS19555 WP_058674772.1 4061525..4062958(+) (rpoN/rpoN1) [Enterobacter hormaechei strain Ehh_19]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTCCAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAGACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTCGACTCCGTAGATGCACTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGATGCAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACTACCCAATCGCTTCAGGACTACCTGATGTGGCAGGTGGAGCTGACGCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTTGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTCCTGAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTCGCCGCGAAAGATCTGCGTGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCTAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCGAACCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCACTCGATCCGCGTCCGGGGCAGTCGATTCAGACCAG
CGAACCGGAATATGTCATTCCCGATGTGCTGGTGAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCCCGTAACGACGCTGATAATCAATACATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATTAAGAGTCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCATTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATAGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCGACGGCCATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.743

100

0.484