Detailed information NTG0839923

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VR625_RS02745
• Genome accession: NZ_CP142147
• Coordinates: 612553..615192 (+)
• Length: 879 a.a.
• NCBI ID: WP_345981408.1
• Uniprot ID: -
• Organism: Streptomyces sp. DSS69
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 607553..620192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VR625_RS02720	-	607989..608237 (+)	249	WP_345981404.1	hypothetical protein	-
VR625_RS02725	dnaK	608681..610576 (+)	1896	WP_345981405.1	molecular chaperone DnaK	-
VR625_RS02730	-	610584..611189 (+)	606	WP_345981406.1	nucleotide exchange factor GrpE	-
VR625_RS02735	-	611196..612155 (+)	960	WP_345981407.1	J domain-containing protein	-
VR625_RS02740	-	612152..612562 (+)	411	WP_109166919.1	chaperone modulator CbpM	-
VR625_RS02745	clpC	612553..615192 (+)	2640	WP_345981408.1	ATP-dependent chaperone ClpB	Regulator
VR625_RS02750	trxA	615189..615647 (+)	459	WP_345981409.1	thioredoxin	-
VR625_RS02755	-	615720..615983 (+)	264	WP_070202638.1	UBP-type zinc finger domain-containing protein	-
VR625_RS02760	-	615983..617743 (+)	1761	WP_345981410.1	FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 879 a.a.
• Molecular weight: 97884.70 Da
• Isoelectric Point: 4.9397

>NTDB_id=839923 VR625_RS02745 WP_345981408.1 612553..615192(+) (clpC) [Streptomyces sp. DSS69]
MDMNRLTQKSQEALQEAQSAAGRMGHTEVDGEHLLLALVDQEDGLIPRLLEQAGSDPAELRAAVREELSRRPKVTGSGAA
PGQVFVTQRLAGLLDAAEREAKRLKDEYVSVEHLLLALAEEGASTAAGRLLNQAGITRDSFLGALTQVRGNQRVTSANPE
VAYEALEKYGRDLVAEAKEGRLDPVIGRDAEIRRVTQILSRKSKNNPVLIGDPGVGKTAIIEGLAQRIVRGDVPEGLRDK
IVFALDMGSLVAGAKYRGEFEERLKAVLSEVKAAQGGILLFVDELHTVVGAGAAEGAMDAGNMLKPMLARGELHMIGATT
LDEYRKHIEKDAALERRFQQVLVSEPSVEDSISILRGLRERLEVFHGVKIQDNALVSAATLSHRYITDRFLPDKAIDLVD
EACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKESDPASHARLEELRKELADLRGEADAKHAQWEAERQAIRRVQEL
RQELEQVRHDAEEAERAYDLNRAAELRYGRLQDLERRLAAEEEQLATRQGQNRLLREVVTEEEIAEIVAAWTGIPVARLQ
EGERDKLLRLDEILRERVVGQDEAVRLVADAIIRARSGIRDPRRPIGSFIFLGPTGVGKTELTKTLARALFDSEDNMVRL
DMSEYQERHTVSRLMGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEIEKAHSDVFNTLLQILDDGRITDAQGRTVDFRNT
VIIMTSNIGSEHLLDGATAEGEIKPDARALVMGELRGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERR
IDVELTDAAREVISHQGYDPVYGARPLRRYISHEVETLVGRALLRGDVQDGATVRVDAAHGELVVTYDPPEEAREARAT

Nucleotide

• Length: 2640 bp

>NTDB_id=839923 VR625_RS02745 WP_345981408.1 612553..615192(+) (clpC) [Streptomyces sp. DSS69]
ATGGACATGAACCGTCTCACACAGAAATCCCAGGAAGCCCTCCAGGAGGCCCAGTCCGCGGCCGGCCGCATGGGGCATAC
CGAAGTGGACGGAGAACACCTGCTGCTCGCACTCGTCGATCAGGAGGACGGTCTGATCCCACGTCTGCTGGAGCAGGCCG
GAAGCGATCCGGCGGAACTGCGCGCGGCCGTGCGCGAGGAACTGTCCCGCCGCCCGAAGGTCACCGGCTCCGGTGCGGCA
CCCGGCCAGGTCTTCGTCACTCAGCGCCTTGCCGGCCTGCTGGACGCCGCCGAACGGGAGGCCAAACGACTCAAGGACGA
GTACGTGTCCGTGGAGCACCTCCTGCTCGCCCTGGCCGAAGAGGGGGCATCAACAGCCGCTGGACGTCTGCTCAACCAGG
CAGGGATCACCAGGGACTCGTTCCTGGGCGCACTCACCCAGGTCCGCGGCAATCAGCGGGTCACCTCCGCCAACCCCGAA
GTGGCCTACGAGGCGCTGGAGAAGTACGGCCGCGATCTCGTCGCCGAGGCCAAGGAGGGCAGGCTCGACCCGGTCATCGG
CCGGGACGCCGAGATCCGCCGCGTCACCCAGATCCTGAGCCGGAAGTCCAAGAACAACCCGGTCCTCATCGGAGACCCCG
GTGTCGGCAAGACCGCCATCATCGAGGGCCTCGCCCAGCGCATCGTCCGCGGCGACGTCCCCGAGGGACTCCGCGACAAG
ATCGTGTTCGCCCTCGACATGGGATCCCTGGTCGCCGGCGCCAAGTACCGGGGCGAGTTCGAGGAACGCCTCAAGGCCGT
GCTCAGCGAGGTCAAGGCCGCACAGGGCGGCATCCTGCTCTTCGTCGACGAACTGCACACCGTCGTCGGTGCGGGCGCCG
CCGAAGGGGCCATGGACGCTGGGAACATGCTCAAGCCGATGCTCGCCCGCGGCGAACTGCACATGATCGGCGCCACCACC
CTCGACGAGTACCGCAAACACATCGAGAAGGACGCTGCGCTGGAGCGACGGTTCCAGCAAGTCCTGGTCAGCGAGCCAAG
TGTCGAGGACAGCATCTCCATCCTGCGCGGACTGCGTGAGCGCCTGGAGGTCTTCCACGGCGTCAAGATCCAGGACAACG
CACTCGTGTCCGCCGCCACCCTCAGCCACCGCTACATCACTGATCGATTCCTGCCCGACAAGGCCATCGACCTCGTCGAC
GAGGCCTGCGCCCGGTTGCGTACCGAGATCGACTCCATGCCCGCCGAACTCGACGAGATCACCCGCCGCGTCACCCGCCT
GGAGATCGAGGAAGCCGCTCTCTCCAAGGAATCGGACCCCGCGAGCCACGCCCGCCTGGAGGAGCTGCGCAAGGAACTGG
CCGACCTGCGCGGTGAGGCCGACGCCAAGCACGCCCAGTGGGAGGCCGAACGGCAGGCGATCCGGCGGGTGCAGGAACTG
CGCCAGGAACTGGAGCAGGTCCGCCACGACGCGGAGGAGGCCGAACGCGCCTACGACCTCAACCGGGCCGCCGAACTGCG
GTACGGCCGCCTCCAGGACCTGGAGCGCCGACTCGCGGCGGAGGAGGAGCAACTGGCCACCCGGCAGGGACAGAACCGTC
TGCTGCGCGAGGTGGTCACCGAAGAGGAGATCGCGGAGATCGTCGCCGCCTGGACCGGTATCCCGGTCGCCCGCCTGCAG
GAAGGCGAGCGCGACAAGCTGCTGCGCCTCGACGAGATCCTCCGCGAGCGTGTCGTCGGCCAGGACGAGGCCGTCAGGCT
CGTCGCCGACGCCATCATCCGCGCCCGCTCCGGCATCCGTGACCCTCGCCGGCCCATCGGTTCCTTCATCTTCCTCGGCC
CCACCGGCGTCGGAAAGACCGAACTGACCAAGACTCTCGCCCGGGCGCTGTTCGACTCCGAGGACAACATGGTCCGCCTC
GACATGAGCGAGTACCAGGAACGGCACACCGTCAGCAGGCTCATGGGCGCACCACCCGGATACGTCGGCTACGAGGAAGG
CGGCCAGCTCACCGAGGCCGTACGCCGCAAGCCGTACTCGGTCGTCCTGTTCGACGAGATCGAGAAGGCTCACAGCGACG
TCTTCAACACTCTGCTGCAGATCCTCGATGACGGCCGCATCACCGATGCCCAGGGCCGCACCGTCGACTTCCGCAACACC
GTGATCATCATGACGTCCAACATCGGCTCCGAGCACCTTCTCGACGGTGCCACCGCCGAGGGTGAGATCAAGCCCGACGC
CCGCGCGCTGGTGATGGGCGAGCTGCGCGGGCACTTCCGCCCGGAGTTCCTCAACCGCGTCGACGACATCGTGCTGTTCA
AGCCGCTGGGCGAGCGGCAGATCGAAAGGATCGTGGAGCTTCAGTTCGACGAACTGCGGCAGCGGCTGGCGGAACGCCGC
ATCGACGTAGAACTCACCGATGCGGCGCGAGAGGTGATTTCCCACCAGGGCTACGACCCGGTGTACGGGGCCAGGCCGCT
GCGGCGGTACATCTCCCACGAGGTGGAGACGCTGGTCGGACGTGCCCTTCTGCGTGGTGACGTCCAGGACGGCGCGACCG
TCCGTGTCGACGCCGCGCACGGAGAGCTGGTGGTCACCTACGACCCGCCGGAAGAGGCCCGGGAAGCGAGGGCAACGTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (776-856)

• ATPase family associated with various cellular activities (AAA) (AAA) (208-341)

• AAA lid domain (AAA_lid_9) (347-449)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-150)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (604-770)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.2	99.545	0.47
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.695	99.317	0.414