Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VR625_RS02570 | Genome accession | NZ_CP142147 |
| Coordinates | 575741..578296 (-) | Length | 851 a.a. |
| NCBI ID | WP_345981391.1 | Uniprot ID | - |
| Organism | Streptomyces sp. DSS69 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 570741..583296
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VR625_RS02530 | - | 570935..571798 (-) | 864 | WP_225976753.1 | RNA polymerase sigma factor SigF | - |
| VR625_RS02535 | - | 571942..572115 (+) | 174 | Protein_506 | ribonuclease BN | - |
| VR625_RS02540 | - | 572380..572820 (+) | 441 | WP_345981388.1 | phage holin family protein | - |
| VR625_RS02545 | - | 572817..573404 (+) | 588 | WP_345981389.1 | DUF3618 domain-containing protein | - |
| VR625_RS02550 | - | 573401..573667 (+) | 267 | WP_109166945.1 | DUF4235 domain-containing protein | - |
| VR625_RS02555 | - | 573869..574372 (+) | 504 | WP_345981390.1 | GNAT family N-acetyltransferase | - |
| VR625_RS02560 | - | 574448..575551 (+) | 1104 | WP_109166943.1 | FAD-dependent oxidoreductase | - |
| VR625_RS02565 | - | 575570..575737 (-) | 168 | WP_204117167.1 | hypothetical protein | - |
| VR625_RS02570 | clpC | 575741..578296 (-) | 2556 | WP_345981391.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VR625_RS02575 | - | 578707..579726 (-) | 1020 | WP_345981392.1 | oxygenase MpaB family protein | - |
| VR625_RS02580 | - | 579832..580437 (+) | 606 | WP_161032899.1 | TetR family transcriptional regulator | - |
| VR625_RS02585 | - | 580592..581941 (+) | 1350 | WP_109166939.1 | OFA family MFS transporter | - |
| VR625_RS02590 | - | 581910..582089 (+) | 180 | WP_158650473.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 851 a.a. Molecular weight: 92381.81 Da Isoelectric Point: 4.7832
>NTDB_id=839921 VR625_RS02570 WP_345981391.1 575741..578296(-) (clpC) [Streptomyces sp. DSS69]
MSMAFGSPSGPPDPFSDLLNRFFGMSPASSPPAVQRVPIGRLLTEPSRELLDAAARRAAEDGTSDLDTEHLLWAATQVEP
TRRLLAQAGVDPERLGDRIAEVLPRESQEPSSEPGLTPAAKRTLALAHARSQAAEVSYIGPEHILGALLGDADSGASRFL
RAQDLDTSKLNGMTDGTGRRPGAAAAGQQPSTTLDEFGRDLTEEARAGRLDPVVGRADEIEQTIEILSRRSKNNPVLIGE
PGVGKTAIAEGLAQRIVAGEVPDTLKDKRVVSLDLSGMVAGAQYRGQFEERLKKVIEDVQEASGEVILFIDELHTVVGAG
ATGEGSMDAGNMLKPALARGELHVVGATTIDEYRKYVEKDAALERRFQPVLIPEPTVEETVQILEGLRDAYEAHHQVRFA
DGALTAAAELSDRYISDRFLPDKAIDLMDQAGARVRLRSANRSTEVVSREDRLAKLRREKDQAVAAEEFERAKALKEQIA
EVEGELAGIEERREGVVSVTAADIADVVSRRTGIPVSQLTAGEKERLLKLEEEMHARIVGQDEAVTAVSEAVRRNRAGMG
DPNRPVGSFLFLGPTGVGKTELAKTLAELLFGAEDRMIRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTERVRRNPYS
VVLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILAHEGDAAELKDELMEDLRGRFLPEFL
NRIDDIIVFHSLTEDDLSEIVEHLLDRSKHRVHAQGLTLDVTEAAKKLLVAHGYQPAFGARPLRRTIQTELDNRVASLLL
GGEAEPGDTIVADVKDDSLHCTIRTGGGAGAGRTRGADEVPAATDNHDGKE
MSMAFGSPSGPPDPFSDLLNRFFGMSPASSPPAVQRVPIGRLLTEPSRELLDAAARRAAEDGTSDLDTEHLLWAATQVEP
TRRLLAQAGVDPERLGDRIAEVLPRESQEPSSEPGLTPAAKRTLALAHARSQAAEVSYIGPEHILGALLGDADSGASRFL
RAQDLDTSKLNGMTDGTGRRPGAAAAGQQPSTTLDEFGRDLTEEARAGRLDPVVGRADEIEQTIEILSRRSKNNPVLIGE
PGVGKTAIAEGLAQRIVAGEVPDTLKDKRVVSLDLSGMVAGAQYRGQFEERLKKVIEDVQEASGEVILFIDELHTVVGAG
ATGEGSMDAGNMLKPALARGELHVVGATTIDEYRKYVEKDAALERRFQPVLIPEPTVEETVQILEGLRDAYEAHHQVRFA
DGALTAAAELSDRYISDRFLPDKAIDLMDQAGARVRLRSANRSTEVVSREDRLAKLRREKDQAVAAEEFERAKALKEQIA
EVEGELAGIEERREGVVSVTAADIADVVSRRTGIPVSQLTAGEKERLLKLEEEMHARIVGQDEAVTAVSEAVRRNRAGMG
DPNRPVGSFLFLGPTGVGKTELAKTLAELLFGAEDRMIRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTERVRRNPYS
VVLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILAHEGDAAELKDELMEDLRGRFLPEFL
NRIDDIIVFHSLTEDDLSEIVEHLLDRSKHRVHAQGLTLDVTEAAKKLLVAHGYQPAFGARPLRRTIQTELDNRVASLLL
GGEAEPGDTIVADVKDDSLHCTIRTGGGAGAGRTRGADEVPAATDNHDGKE
Nucleotide
Download Length: 2556 bp
>NTDB_id=839921 VR625_RS02570 WP_345981391.1 575741..578296(-) (clpC) [Streptomyces sp. DSS69]
ATGTCGATGGCTTTCGGATCTCCCTCCGGTCCGCCGGACCCGTTCAGCGACCTGCTGAATCGCTTCTTCGGTATGTCGCC
GGCCTCGTCGCCACCGGCCGTGCAGCGCGTCCCCATCGGCCGGCTCCTCACGGAGCCCTCGCGGGAACTCCTGGACGCCG
CAGCCCGCAGAGCCGCCGAGGACGGCACGTCCGACCTCGACACGGAGCACCTCCTGTGGGCCGCCACCCAGGTGGAGCCC
ACCCGCAGGCTGCTCGCCCAGGCCGGGGTCGATCCCGAGCGGCTCGGCGACCGGATCGCCGAGGTGCTGCCCAGGGAGTC
ACAGGAGCCGTCCTCCGAGCCCGGCCTCACCCCGGCGGCCAAGCGGACCCTCGCCCTCGCCCACGCCAGGTCGCAGGCGG
CCGAGGTCTCCTACATCGGGCCCGAGCACATCCTCGGCGCCCTCCTCGGCGACGCCGACTCCGGCGCCTCCCGGTTCCTG
CGCGCCCAGGACCTGGACACCTCCAAGCTGAACGGCATGACCGACGGGACAGGCCGCAGGCCCGGCGCAGCCGCCGCCGG
ACAGCAGCCGTCCACCACCCTGGACGAGTTCGGGCGGGACCTGACCGAGGAGGCCCGGGCGGGCAGGCTGGACCCCGTGG
TCGGCCGGGCCGACGAGATCGAGCAGACCATCGAGATCCTGTCGCGGCGCTCCAAGAACAACCCCGTCCTCATCGGCGAG
CCGGGCGTCGGCAAGACCGCCATCGCGGAAGGGCTCGCCCAGCGCATCGTCGCGGGCGAGGTGCCCGACACGCTGAAGGA
CAAGCGGGTCGTCTCGCTGGACCTGTCCGGCATGGTGGCCGGAGCCCAGTACCGCGGCCAGTTCGAGGAGCGGCTGAAGA
AGGTCATCGAGGACGTCCAGGAGGCGAGCGGCGAGGTCATCCTCTTCATCGACGAACTCCACACGGTCGTCGGAGCGGGC
GCGACGGGCGAGGGCTCCATGGACGCGGGCAACATGCTCAAGCCCGCCCTCGCACGCGGCGAGCTCCATGTGGTCGGTGC
GACGACGATCGACGAGTACCGCAAGTACGTCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCCGTCCTGATCCCGG
AGCCCACCGTCGAGGAGACCGTACAGATCCTCGAAGGGCTGCGGGACGCGTACGAGGCGCACCACCAGGTCCGCTTCGCC
GACGGGGCGCTGACGGCGGCCGCCGAGCTGTCCGACCGCTACATCAGCGACCGGTTCCTGCCCGACAAGGCCATCGACCT
GATGGACCAGGCCGGTGCCCGCGTACGGCTGCGCAGCGCGAACCGCTCCACCGAGGTCGTCAGCCGGGAGGACCGCCTCG
CGAAGCTTCGCCGGGAGAAGGACCAGGCCGTCGCCGCCGAGGAGTTCGAGCGGGCCAAGGCGCTCAAGGAGCAGATCGCC
GAGGTCGAGGGCGAGCTCGCCGGGATCGAGGAGCGCCGCGAGGGCGTCGTCTCGGTCACGGCCGCCGACATCGCCGACGT
CGTCTCCCGCCGCACCGGCATCCCGGTCTCCCAGCTCACCGCGGGTGAGAAGGAGCGGCTCCTCAAGCTGGAGGAGGAGA
TGCACGCCCGCATCGTCGGCCAGGACGAGGCCGTCACCGCCGTCTCGGAAGCCGTACGCCGCAACCGCGCGGGTATGGGG
GACCCGAACCGGCCCGTGGGCTCGTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACCGAGCTGGCGAAGACCCTCGC
CGAGCTGCTGTTCGGCGCGGAGGACCGGATGATCCGGTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTGGCCCGGC
TCGTCGGAGCGCCGCCCGGATACGTCGGTTACGACGAGGCGGGCCAGCTGACCGAGAGGGTGCGGCGCAACCCGTACAGC
GTGGTGCTGTTCGACGAGGTCGAGAAGGCGCACCCCGACGTCTTCAACACGCTGCTCCAGATCCTCGACGACGGGCGGCT
CACGGACGGCCAGGGCCGTACGGTCGACTTCCGCCACTGCGTCGTCATCATGACGTCCAACATCGGCGCCCACCGCATCC
TCGCCCACGAGGGCGACGCCGCCGAGCTCAAGGACGAGCTGATGGAGGATCTGCGGGGGCGGTTCCTGCCCGAGTTCCTC
AACCGCATCGACGACATCATCGTCTTCCACAGCCTCACCGAGGACGACCTGTCCGAGATCGTGGAGCACCTGCTGGACCG
CAGCAAGCACCGCGTCCACGCGCAGGGCCTGACGCTGGACGTCACCGAGGCGGCGAAGAAGCTCCTGGTGGCCCACGGTT
ACCAGCCGGCGTTCGGCGCCCGTCCGCTGCGCCGCACGATCCAGACGGAACTCGACAACCGCGTCGCCTCCCTGCTCCTC
GGCGGCGAGGCCGAACCGGGCGACACGATCGTCGCCGACGTGAAGGACGACTCCCTGCACTGCACGATCCGTACGGGCGG
CGGCGCCGGTGCCGGGAGGACGCGCGGGGCCGACGAGGTACCCGCGGCGACCGACAACCACGACGGCAAGGAGTGA
ATGTCGATGGCTTTCGGATCTCCCTCCGGTCCGCCGGACCCGTTCAGCGACCTGCTGAATCGCTTCTTCGGTATGTCGCC
GGCCTCGTCGCCACCGGCCGTGCAGCGCGTCCCCATCGGCCGGCTCCTCACGGAGCCCTCGCGGGAACTCCTGGACGCCG
CAGCCCGCAGAGCCGCCGAGGACGGCACGTCCGACCTCGACACGGAGCACCTCCTGTGGGCCGCCACCCAGGTGGAGCCC
ACCCGCAGGCTGCTCGCCCAGGCCGGGGTCGATCCCGAGCGGCTCGGCGACCGGATCGCCGAGGTGCTGCCCAGGGAGTC
ACAGGAGCCGTCCTCCGAGCCCGGCCTCACCCCGGCGGCCAAGCGGACCCTCGCCCTCGCCCACGCCAGGTCGCAGGCGG
CCGAGGTCTCCTACATCGGGCCCGAGCACATCCTCGGCGCCCTCCTCGGCGACGCCGACTCCGGCGCCTCCCGGTTCCTG
CGCGCCCAGGACCTGGACACCTCCAAGCTGAACGGCATGACCGACGGGACAGGCCGCAGGCCCGGCGCAGCCGCCGCCGG
ACAGCAGCCGTCCACCACCCTGGACGAGTTCGGGCGGGACCTGACCGAGGAGGCCCGGGCGGGCAGGCTGGACCCCGTGG
TCGGCCGGGCCGACGAGATCGAGCAGACCATCGAGATCCTGTCGCGGCGCTCCAAGAACAACCCCGTCCTCATCGGCGAG
CCGGGCGTCGGCAAGACCGCCATCGCGGAAGGGCTCGCCCAGCGCATCGTCGCGGGCGAGGTGCCCGACACGCTGAAGGA
CAAGCGGGTCGTCTCGCTGGACCTGTCCGGCATGGTGGCCGGAGCCCAGTACCGCGGCCAGTTCGAGGAGCGGCTGAAGA
AGGTCATCGAGGACGTCCAGGAGGCGAGCGGCGAGGTCATCCTCTTCATCGACGAACTCCACACGGTCGTCGGAGCGGGC
GCGACGGGCGAGGGCTCCATGGACGCGGGCAACATGCTCAAGCCCGCCCTCGCACGCGGCGAGCTCCATGTGGTCGGTGC
GACGACGATCGACGAGTACCGCAAGTACGTCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCCGTCCTGATCCCGG
AGCCCACCGTCGAGGAGACCGTACAGATCCTCGAAGGGCTGCGGGACGCGTACGAGGCGCACCACCAGGTCCGCTTCGCC
GACGGGGCGCTGACGGCGGCCGCCGAGCTGTCCGACCGCTACATCAGCGACCGGTTCCTGCCCGACAAGGCCATCGACCT
GATGGACCAGGCCGGTGCCCGCGTACGGCTGCGCAGCGCGAACCGCTCCACCGAGGTCGTCAGCCGGGAGGACCGCCTCG
CGAAGCTTCGCCGGGAGAAGGACCAGGCCGTCGCCGCCGAGGAGTTCGAGCGGGCCAAGGCGCTCAAGGAGCAGATCGCC
GAGGTCGAGGGCGAGCTCGCCGGGATCGAGGAGCGCCGCGAGGGCGTCGTCTCGGTCACGGCCGCCGACATCGCCGACGT
CGTCTCCCGCCGCACCGGCATCCCGGTCTCCCAGCTCACCGCGGGTGAGAAGGAGCGGCTCCTCAAGCTGGAGGAGGAGA
TGCACGCCCGCATCGTCGGCCAGGACGAGGCCGTCACCGCCGTCTCGGAAGCCGTACGCCGCAACCGCGCGGGTATGGGG
GACCCGAACCGGCCCGTGGGCTCGTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACCGAGCTGGCGAAGACCCTCGC
CGAGCTGCTGTTCGGCGCGGAGGACCGGATGATCCGGTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTGGCCCGGC
TCGTCGGAGCGCCGCCCGGATACGTCGGTTACGACGAGGCGGGCCAGCTGACCGAGAGGGTGCGGCGCAACCCGTACAGC
GTGGTGCTGTTCGACGAGGTCGAGAAGGCGCACCCCGACGTCTTCAACACGCTGCTCCAGATCCTCGACGACGGGCGGCT
CACGGACGGCCAGGGCCGTACGGTCGACTTCCGCCACTGCGTCGTCATCATGACGTCCAACATCGGCGCCCACCGCATCC
TCGCCCACGAGGGCGACGCCGCCGAGCTCAAGGACGAGCTGATGGAGGATCTGCGGGGGCGGTTCCTGCCCGAGTTCCTC
AACCGCATCGACGACATCATCGTCTTCCACAGCCTCACCGAGGACGACCTGTCCGAGATCGTGGAGCACCTGCTGGACCG
CAGCAAGCACCGCGTCCACGCGCAGGGCCTGACGCTGGACGTCACCGAGGCGGCGAAGAAGCTCCTGGTGGCCCACGGTT
ACCAGCCGGCGTTCGGCGCCCGTCCGCTGCGCCGCACGATCCAGACGGAACTCGACAACCGCGTCGCCTCCCTGCTCCTC
GGCGGCGAGGCCGAACCGGGCGACACGATCGTCGCCGACGTGAAGGACGACTCCCTGCACTGCACGATCCGTACGGGCGG
CGGCGCCGGTGCCGGGAGGACGCGCGGGGCCGACGAGGTACCCGCGGCGACCGACAACCACGACGGCAAGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.376 |
93.772 |
0.472 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.22 |
97.062 |
0.42 |
| clpC | Streptococcus pneumoniae D39 |
43.099 |
97.062 |
0.418 |
| clpC | Streptococcus pneumoniae Rx1 |
43.099 |
97.062 |
0.418 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.284 |
82.726 |
0.416 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.472 |
93.537 |
0.416 |
| clpC | Streptococcus mutans UA159 |
42.718 |
96.827 |
0.414 |
| clpC | Streptococcus thermophilus LMD-9 |
44.164 |
88.602 |
0.391 |
| clpE | Streptococcus mutans UA159 |
53.722 |
72.62 |
0.39 |
| clpE | Streptococcus pneumoniae D39 |
53.301 |
72.973 |
0.389 |
| clpE | Streptococcus pneumoniae Rx1 |
53.301 |
72.973 |
0.389 |
| clpE | Streptococcus pneumoniae R6 |
53.301 |
72.973 |
0.389 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.709 |
88.719 |
0.388 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.226 |
72.855 |
0.388 |