Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/blpH   Type   Regulator
Locus tag   VRA41_RS07780 Genome accession   NZ_CP142105
Coordinates   1490264..1491067 (+) Length   267 a.a.
NCBI ID   WP_224103634.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   phosphorylation of ComE; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485264..1496067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS07765 (VRA41_07765) - 1486968..1488358 (+) 1391 Protein_1487 IS3-like element ISSth1b family transposase -
  VRA41_RS07770 (VRA41_07770) - 1488504..1488746 (-) 243 WP_011227518.1 Blp family class II bacteriocin -
  VRA41_RS07775 (VRA41_07775) comE/blpR 1488996..1489727 (+) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor Regulator
  VRA41_RS07780 (VRA41_07780) comD/blpH 1490264..1491067 (+) 804 WP_224103634.1 ATP-binding protein Regulator
  VRA41_RS07785 (VRA41_07785) - 1491085..1491246 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  VRA41_RS07790 (VRA41_07790) - 1491261..1492629 (-) 1369 Protein_1492 bacteriocin secretion accessory protein -
  VRA41_RS07795 (VRA41_07795) comA/nlmT 1492645..1494798 (-) 2154 WP_059257386.1 peptide cleavage/export ABC transporter Regulator

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30835.17 Da        Isoelectric Point: 4.8309

>NTDB_id=839893 VRA41_RS07780 WP_224103634.1 1490264..1491067(+) (comD/blpH) [Streptococcus thermophilus strain SCB0351]
MYLENTTHSSTLELRKLCVVISLVLFFIMIVFLERNIREMIQGQLDFQKNLQLENLYTYNKHIECLYNSVRSFRHDYSNL
LVTLRLGIDKDDMDIVKEVYDSVLQESDKRLNTRNFDLARLVNIQDNTLKSLLSAKVLQAEEEGIEAQISIPEPIHLIGM
EILDFIIVTSIFLDNAIEGAIQTQNHKITISFWEDHRSQLLSISNTISEEQTETKTIFERGVSNKGRERGIGLANVTEIL
DNYINVNLETQSNNFSFTQQLTITKKA

Nucleotide


Download         Length: 804 bp        

>NTDB_id=839893 VRA41_RS07780 WP_224103634.1 1490264..1491067(+) (comD/blpH) [Streptococcus thermophilus strain SCB0351]
ATGTATCTTGAAAACACTACTCACTCTTCAACTTTGGAGCTTCGAAAACTCTGTGTTGTTATTTCACTTGTCCTCTTCTT
CATTATGATTGTCTTTTTAGAAAGAAACATTCGTGAAATGATTCAAGGACAATTGGACTTCCAGAAAAATCTCCAGCTAG
AGAATCTCTACACCTACAATAAACATATTGAATGTCTCTACAATTCTGTTCGTAGTTTTAGACACGATTATAGTAATCTC
TTAGTCACATTACGATTGGGGATAGATAAAGACGATATGGATATTGTCAAAGAAGTCTATGATAGTGTGCTTCAAGAATC
CGATAAACGATTAAATACAAGAAACTTTGACTTAGCTAGACTCGTTAATATTCAGGATAATACTTTGAAAAGCCTTCTGT
CCGCAAAAGTTTTACAAGCAGAAGAAGAAGGTATTGAAGCTCAGATTAGCATCCCAGAACCCATCCACTTGATTGGGATG
GAGATTCTGGACTTCATTATCGTCACTTCTATTTTTTTAGATAACGCTATTGAAGGTGCCATTCAAACTCAAAACCATAA
AATTACTATTAGCTTTTGGGAAGATCATCGTTCACAGCTATTATCTATTAGCAATACCATAAGTGAAGAACAAACAGAAA
CTAAAACCATATTTGAAAGAGGTGTCTCCAACAAGGGACGAGAGCGAGGCATTGGCCTTGCTAATGTCACAGAAATCTTA
GATAACTATATCAATGTAAACTTAGAAACACAGAGTAACAATTTCTCATTCACACAACAATTAACAATAACTAAAAAGGC
CTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(160-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/blpH Streptococcus mutans UA159

38.189

95.131

0.363