Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VRA41_RS05610 Genome accession   NZ_CP142105
Coordinates   1058709..1060379 (-) Length   556 a.a.
NCBI ID   WP_011227293.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1053709..1065379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS05580 (VRA41_05580) - 1054698..1055636 (+) 939 WP_002950994.1 dihydroorotate oxidase -
  VRA41_RS05585 (VRA41_05585) - 1055701..1055901 (-) 201 WP_002950995.1 hypothetical protein -
  VRA41_RS05590 (VRA41_05590) - 1055960..1056235 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  VRA41_RS05595 (VRA41_05595) - 1056372..1056941 (-) 570 WP_011226122.1 YpmS family protein -
  VRA41_RS05600 (VRA41_05600) - 1056934..1057809 (-) 876 WP_041827053.1 SGNH/GDSL hydrolase family protein -
  VRA41_RS05605 (VRA41_05605) - 1057802..1058638 (-) 837 WP_011226124.1 DegV family protein -
  VRA41_RS05610 (VRA41_05610) recN 1058709..1060379 (-) 1671 WP_011227293.1 DNA repair protein RecN Machinery gene
  VRA41_RS05615 (VRA41_05615) - 1060388..1060834 (-) 447 WP_011226126.1 arginine repressor -
  VRA41_RS05620 (VRA41_05620) - 1060782..1061648 (-) 867 WP_011226127.1 TlyA family RNA methyltransferase -
  VRA41_RS05625 (VRA41_05625) - 1061641..1062513 (-) 873 WP_011226128.1 polyprenyl synthetase family protein -
  VRA41_RS05630 (VRA41_05630) - 1062513..1062728 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  VRA41_RS05635 (VRA41_05635) xseA 1062706..1064046 (-) 1341 WP_011227294.1 exodeoxyribonuclease VII large subunit -
  VRA41_RS05640 (VRA41_05640) - 1064235..1064480 (-) 246 WP_011227295.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62500.65 Da        Isoelectric Point: 4.5240

>NTDB_id=839868 VRA41_RS05610 WP_011227293.1 1058709..1060379(-) (recN) [Streptococcus thermophilus strain SCB0351]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHINMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=839868 VRA41_RS05610 WP_011227293.1 1058709..1060379(-) (recN) [Streptococcus thermophilus strain SCB0351]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAAG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAACATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGTCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45