Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QPR68_RS08420 Genome accession   NZ_CP126774
Coordinates   1783718..1784344 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain Ehh_22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778718..1789344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR68_RS08400 (QPR68_08400) - 1779117..1780877 (-) 1761 WP_032653157.1 Lon protease family protein -
  QPR68_RS08405 (QPR68_08405) matP 1781064..1781516 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  QPR68_RS08410 (QPR68_08410) ompA 1781582..1782634 (-) 1053 WP_017694761.1 porin OmpA -
  QPR68_RS08415 (QPR68_08415) sulA 1782991..1783500 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  QPR68_RS08420 (QPR68_08420) sxy/tfoX 1783718..1784344 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  QPR68_RS08425 (QPR68_08425) yccS 1784301..1786463 (-) 2163 WP_032653159.1 YccS family putative transporter -
  QPR68_RS08430 (QPR68_08430) - 1786482..1786928 (-) 447 WP_003858149.1 YccF domain-containing protein -
  QPR68_RS08435 (QPR68_08435) helD 1787051..1789105 (+) 2055 WP_032653161.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=839831 QPR68_RS08420 WP_017384804.1 1783718..1784344(+) (sxy/tfoX) [Enterobacter hormaechei strain Ehh_22]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=839831 QPR68_RS08420 WP_017384804.1 1783718..1784344(+) (sxy/tfoX) [Enterobacter hormaechei strain Ehh_22]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCTCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572