Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QPR60_RS08200 Genome accession   NZ_CP126746
Coordinates   1715837..1716463 (+) Length   208 a.a.
NCBI ID   WP_032673551.1    Uniprot ID   A0AAX3Z756
Organism   Enterobacter hormaechei strain Ehh_25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710837..1721463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR60_RS08180 (QPR60_08180) - 1711237..1712997 (-) 1761 WP_306675642.1 Lon protease family protein -
  QPR60_RS08185 (QPR60_08185) matP 1713184..1713636 (+) 453 WP_306675643.1 macrodomain Ter protein MatP -
  QPR60_RS08190 (QPR60_08190) ompA 1713701..1714753 (-) 1053 WP_017694761.1 porin OmpA -
  QPR60_RS08195 (QPR60_08195) sulA 1715110..1715619 (-) 510 WP_032673744.1 SOS-induced cell division inhibitor SulA -
  QPR60_RS08200 (QPR60_08200) sxy/tfoX 1715837..1716463 (+) 627 WP_032673551.1 TfoX/Sxy family DNA transformation protein Regulator
  QPR60_RS08205 (QPR60_08205) yccS 1716420..1718582 (-) 2163 WP_006809343.1 YccS family putative transporter -
  QPR60_RS08210 (QPR60_08210) - 1718601..1719047 (-) 447 WP_232961801.1 YccF domain-containing protein -
  QPR60_RS08215 (QPR60_08215) helD 1719170..1721224 (+) 2055 WP_306675644.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24032.66 Da        Isoelectric Point: 9.4592

>NTDB_id=839722 QPR60_RS08200 WP_032673551.1 1715837..1716463(+) (sxy/tfoX) [Enterobacter hormaechei strain Ehh_25]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEEMLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=839722 QPR60_RS08200 WP_032673551.1 1715837..1716463(+) (sxy/tfoX) [Enterobacter hormaechei strain Ehh_25]
ATGAAAAAGATATCCTATGAGCGGATTTATCAATCGCAGGAATACCTCTCTCCGCTGGGTGAAATTCATCATCGCGCCCT
GTTTGGCGGCTACACCCTCGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCTTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAATGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGCCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCTGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATCACCAACGAAGAGATGCTACGACAGTTGGGGGCAAAAACGAGCTGGCTGAAAATGCGCTCTAAAAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTGGAAGGGGCCATCGAAGGGCTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCACAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572