Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VP461_RS07295 Genome accession   NZ_CP142100
Coordinates   1589822..1590457 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain A20AB13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584822..1595457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP461_RS07270 (VP461_07270) - 1584878..1585858 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  VP461_RS07275 (VP461_07275) kdsB 1585870..1586631 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VP461_RS07280 (VP461_07280) lpxK 1586641..1587651 (-) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  VP461_RS07285 (VP461_07285) msbA 1587654..1589381 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  VP461_RS07290 (VP461_07290) - 1589378..1589806 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  VP461_RS07295 (VP461_07295) exbB 1589822..1590457 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VP461_RS07300 (VP461_07300) - 1590507..1591394 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  VP461_RS07305 (VP461_07305) - 1591391..1592173 (-) 783 WP_000057212.1 ParA family protein -
  VP461_RS07310 (VP461_07310) rsmG 1592195..1592827 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  VP461_RS07315 (VP461_07315) murU 1592915..1593604 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  VP461_RS07320 (VP461_07320) - 1593604..1594617 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=839692 VP461_RS07295 WP_000264037.1 1589822..1590457(-) (exbB) [Acinetobacter baumannii strain A20AB13]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=839692 VP461_RS07295 WP_000264037.1 1589822..1590457(-) (exbB) [Acinetobacter baumannii strain A20AB13]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393