Detailed information NTG0839654

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QPX65_RS12850
• Genome accession: NZ_CP126698
• Coordinates: 2699220..2700212 (-)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain VV2018
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2694220..2705212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPX65_RS12830 (QPX65_12830)	recX	2694247..2694708 (-)	462	WP_123773057.1	recombination regulator RecX	-
QPX65_RS12835 (QPX65_12835)	recA	2694813..2695862 (-)	1050	WP_026130625.1	recombinase RecA	Machinery gene
QPX65_RS12840 (QPX65_12840)	pncC	2695996..2696499 (-)	504	WP_188011773.1	nicotinamide-nucleotide amidase	-
QPX65_RS12845 (QPX65_12845)	mutS	2696583..2699144 (+)	2562	WP_285454544.1	DNA mismatch repair protein MutS	-
QPX65_RS12850 (QPX65_12850)	rpoS	2699220..2700212 (-)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
QPX65_RS12855 (QPX65_12855)	-	2700293..2701189 (-)	897	WP_206638793.1	peptidoglycan DD-metalloendopeptidase family protein	-
QPX65_RS12860 (QPX65_12860)	-	2701233..2701859 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QPX65_RS12865 (QPX65_12865)	surE	2701862..2702629 (-)	768	WP_039554647.1	5'/3'-nucleotidase SurE	-
QPX65_RS12870 (QPX65_12870)	truD	2702635..2703678 (-)	1044	WP_224635496.1	tRNA pseudouridine(13) synthase TruD	-
QPX65_RS12875 (QPX65_12875)	ispF	2703714..2704190 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QPX65_RS12880 (QPX65_12880)	ispD	2704187..2704900 (-)	714	WP_224635495.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QPX65_RS12885 (QPX65_12885)	ftsB	2704900..2705181 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=839654 QPX65_RS12850 WP_045596855.1 2699220..2700212(-) (rpoS) [Vibrio vulnificus strain VV2018]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=839654 QPX65_RS12850 WP_045596855.1 2699220..2700212(-) (rpoS) [Vibrio vulnificus strain VV2018]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGATGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCAGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTTGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833