Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QPX65_RS12730 Genome accession   NZ_CP126698
Coordinates   2677348..2677866 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain VV2018     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672348..2682866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS12705 (QPX65_12705) rimM 2672423..2672971 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  QPX65_RS12710 (QPX65_12710) rpsP 2672987..2673235 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  QPX65_RS12715 (QPX65_12715) ffh 2673510..2674886 (-) 1377 WP_011079540.1 signal recognition particle protein -
  QPX65_RS12720 (QPX65_12720) - 2675100..2675894 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  QPX65_RS12725 (QPX65_12725) - 2675981..2677258 (+) 1278 WP_263222405.1 CNNM domain-containing protein -
  QPX65_RS12730 (QPX65_12730) luxS 2677348..2677866 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  QPX65_RS12735 (QPX65_12735) - 2677917..2678522 (-) 606 WP_285456897.1 hypothetical protein -
  QPX65_RS12740 (QPX65_12740) gshA 2678560..2680125 (-) 1566 WP_285454520.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=839651 QPX65_RS12730 WP_011079537.1 2677348..2677866(-) (luxS) [Vibrio vulnificus strain VV2018]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=839651 QPX65_RS12730 WP_011079537.1 2677348..2677866(-) (luxS) [Vibrio vulnificus strain VV2018]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTGGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATTGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCAGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866