Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QPX65_RS06220 Genome accession   NZ_CP126698
Coordinates   1349886..1351307 (-) Length   473 a.a.
NCBI ID   WP_285456347.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1344886..1356307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS06190 (QPX65_06190) - 1345294..1346061 (+) 768 WP_011080632.1 phospholipase A -
  QPX65_RS06195 (QPX65_06195) - 1346300..1346704 (+) 405 WP_285456340.1 transporter -
  QPX65_RS06200 (QPX65_06200) - 1346778..1347881 (-) 1104 WP_285456342.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  QPX65_RS06205 (QPX65_06205) - 1348084..1348476 (-) 393 WP_060531898.1 SulA-like leucine-rich domain-containing protein -
  QPX65_RS06210 (QPX65_06210) - 1348788..1349465 (-) 678 WP_011080628.1 LrgB family protein -
  QPX65_RS06215 (QPX65_06215) - 1349468..1349839 (-) 372 WP_285456345.1 CidA/LrgA family protein -
  QPX65_RS06220 (QPX65_06220) sbcB 1349886..1351307 (-) 1422 WP_285456347.1 exodeoxyribonuclease I Machinery gene
  QPX65_RS06225 (QPX65_06225) - 1351381..1352079 (-) 699 WP_285456350.1 oxidoreductase -
  QPX65_RS06230 (QPX65_06230) cobT 1352616..1353644 (+) 1029 WP_285456352.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  QPX65_RS06235 (QPX65_06235) - 1353646..1354413 (+) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  QPX65_RS06240 (QPX65_06240) cobU 1354416..1354976 (+) 561 WP_285456354.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  QPX65_RS06245 (QPX65_06245) cobC 1354986..1355624 (+) 639 WP_206637843.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54757.99 Da        Isoelectric Point: 5.1722

>NTDB_id=839642 QPX65_RS06220 WP_285456347.1 1349886..1351307(-) (sbcB) [Vibrio vulnificus strain VV2018]
MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKTQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=839642 QPX65_RS06220 WP_285456347.1 1349886..1351307(-) (sbcB) [Vibrio vulnificus strain VV2018]
ATGCAGCAAGACAATCAGCCCTCTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAACGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGCGTAGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTAGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCAATTTTAGCGCCAGCCAAAACCCTCACAGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACTGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.297

99.789

0.801