Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VQY98_RS06060 Genome accession   NZ_CP142070
Coordinates   1220108..1220845 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GN4143     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215108..1225845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY98_RS06030 (VQY98_06035) yfiL 1215266..1215631 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  VQY98_RS06035 (VQY98_06040) aroF 1215841..1216911 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  VQY98_RS06040 (VQY98_06045) tyrA 1216922..1218043 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  VQY98_RS06045 (VQY98_06050) pheA 1218086..1219246 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  VQY98_RS06050 (VQY98_06055) pheL 1219345..1219392 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  VQY98_RS06055 (VQY98_06060) raiA 1219496..1219837 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  VQY98_RS06060 (VQY98_06065) comL 1220108..1220845 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  VQY98_RS06065 (VQY98_06070) rluD 1220980..1221960 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VQY98_RS06070 (VQY98_06075) yfiH 1221957..1222688 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  VQY98_RS06075 (VQY98_06080) clpC 1222818..1225391 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=839612 VQY98_RS06060 WP_000197686.1 1220108..1220845(-) (comL) [Escherichia coli strain GN4143]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=839612 VQY98_RS06060 WP_000197686.1 1220108..1220845(-) (comL) [Escherichia coli strain GN4143]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376