Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QPX68_RS12135 Genome accession   NZ_CP126696
Coordinates   2518605..2519219 (-) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513605..2524219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS12105 rpsT 2513908..2514174 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  QPX68_RS12110 holA 2514191..2515232 (-) 1042 Protein_2341 DNA polymerase III subunit delta -
  QPX68_RS12115 - 2515272..2515423 (-) 152 Protein_2342 hypothetical protein -
  QPX68_RS12120 - 2515464..2515598 (+) 135 WP_003152870.1 YqzM family protein -
  QPX68_RS12125 comEC 2515617..2517968 (-) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QPX68_RS12130 - 2517969..2518538 (-) 570 WP_003152868.1 ComE operon protein 2 -
  QPX68_RS12135 comEA 2518605..2519219 (-) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  QPX68_RS12140 comER 2519278..2520099 (+) 822 WP_012118027.1 late competence protein ComER -
  QPX68_RS12145 - 2520168..2520905 (-) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  QPX68_RS12150 rsfS 2520902..2521258 (-) 357 WP_007408260.1 ribosome silencing factor -
  QPX68_RS12155 yqeK 2521262..2521837 (-) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QPX68_RS12160 - 2521827..2522396 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  QPX68_RS12165 yhbY 2522407..2522697 (-) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  QPX68_RS12170 aroE 2522691..2523533 (-) 843 WP_032873946.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=839582 QPX68_RS12135 WP_032873955.1 2518605..2519219(-) (comEA) [Bacillus amyloliquefaciens strain GZY63]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=839582 QPX68_RS12135 WP_032873955.1 2518605..2519219(-) (comEA) [Bacillus amyloliquefaciens strain GZY63]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363