Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JN167_RS02415 Genome accession   NZ_AP024201
Coordinates   525834..527198 (+) Length   454 a.a.
NCBI ID   WP_031787934.1    Uniprot ID   A0A7U7JST8
Organism   Staphylococcus argenteus strain Tokyo13069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 520834..532198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN167_RS02395 (TMSFP069_04540) - 520843..521304 (+) 462 WP_000551760.1 CtsR family transcriptional regulator -
  JN167_RS02400 (TMSFP069_04550) - 521323..521889 (+) 567 WP_047526084.1 UvrB/UvrC motif-containing protein -
  JN167_RS02405 (TMSFP069_04560) - 521879..522886 (+) 1008 WP_014373784.1 protein arginine kinase -
  JN167_RS02410 (TMSFP069_04570) - 522901..525357 (+) 2457 WP_000897144.1 ATP-dependent Clp protease ATP-binding subunit -
  JN167_RS02415 (TMSFP069_04580) radA 525834..527198 (+) 1365 WP_031787934.1 DNA repair protein RadA Machinery gene
  JN167_RS02420 (TMSFP069_04590) - 527223..528296 (+) 1074 WP_001028364.1 PIN/TRAM domain-containing protein -
  JN167_RS02425 (TMSFP069_04600) gltX 528786..530240 (+) 1455 WP_202257256.1 glutamate--tRNA ligase -
  JN167_RS02430 (TMSFP069_04610) cysE 530657..531304 (+) 648 WP_202257258.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49820.30 Da        Isoelectric Point: 7.0049

>NTDB_id=83955 JN167_RS02415 WP_031787934.1 525834..527198(+) (radA) [Staphylococcus argenteus strain Tokyo13069]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKEIAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLNQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPKNNIGGWTYPEGIQVIGVTSVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=83955 JN167_RS02415 WP_031787934.1 525834..527198(+) (radA) [Staphylococcus argenteus strain Tokyo13069]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGTCCCAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCTGCCAATCCAAAGCATGGAGTAAAAACAAAAGAAATAGCTG
GTAAAGTACAAAAACTAAATAGTATTAAACATGAAACGACACCTAGAGTATTAACGGATTCTGCAGAATTCAACCGCGTA
TTAGGTGGCGGAATTGTTAGCGGATCACTGGTCCTGATAGGTGGAGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCTTCTTTATCACAAAAGAAAAAAGTGTTATATATTACTGGGGAAGAATCCCTTAATCAAACGAAACTTCGAG
CAGAGCGTTTAGATGAAGACTCTAGTGAATTACAAGTATTAGCAGAAACAGATTTAGAAGTTATATATCAGACAGTTAAA
GAAGAACAACCAGACTTACTAGTAGTTGATTCTATTCAAACGATTTATCACCCTGAAATTAGTTCGGCACCGGGTTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAACATTGCTAAACAAATGAATATTGCAACTTTTATTGTTGGACATG
TAACGAAAGAAGGTCAAATTGCAGGTCCTAGATTATTGGAACATATGGTAGATACAGTGCTTTATTTTGAAGGTGATGAA
CATCATGCATATCGAATTTTACGTGCTGTTAAAAACCGTTTTGGCTCTACAAATGAAATGGGTATTTTTGAAATGAAACA
AAGCGGATTAAAAGGTGTTAATAATCCGTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCTGGGTCTACAATTG
TTGCAACAATGGAAGGTACAAGACCACTTTTAATAGAAGTACAAGCGCTTGTGACACCGACAACATTTAATAATCCAAGA
AGAATGGCAACGGGAATTGATCATAATCGACTTAGTTTACTAATGGCTGTTTTAGAAAAGAAAGAAAATTATTTATTACA
GCAACAAGATGCTTATATCAAAGTCGCAGGTGGTGTGAAATTAACAGAGCCAGCTGTTGATTTAAGTGTAATTGTGGCTA
CCGCATCAAGCTTTAAAGATAAAGCAGTTGATGGTTTAGATTGTTACATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGCGTATCTCGGATAGAGCAACGCGTACAAGAAGCTGCAAAGTTAGGCTTCAAACGTGCAATTATTCCTAAAAATAATAT
TGGCGGATGGACATATCCAGAAGGGATTCAAGTAATTGGCGTAACTTCTGTACATGAAGCACTATCATTCGCTCTACATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JST8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.674
  radA Streptococcus pneumoniae Rx1

61.83

98.678

0.61
  radA Streptococcus pneumoniae D39

61.83

98.678

0.61
  radA Streptococcus pneumoniae R6

61.83

98.678

0.61
  radA Streptococcus pneumoniae TIGR4

61.83

98.678

0.61
  radA Streptococcus mitis NCTC 12261

61.83

98.678

0.61
  radA Streptococcus mitis SK321

61.83

98.678

0.61

Multiple sequence alignment