Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   QPX68_RS02015 Genome accession   NZ_CP126696
Coordinates   398011..398130 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 393011..403130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS02000 - 394623..395306 (+) 684 WP_032872879.1 response regulator transcription factor -
  QPX68_RS02005 - 395293..396726 (+) 1434 WP_161503657.1 HAMP domain-containing sensor histidine kinase -
  QPX68_RS02010 rapC 396879..398027 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  QPX68_RS02015 phrC 398011..398130 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QPX68_RS02020 - 398281..398376 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  QPX68_RS02025 - 398471..399835 (-) 1365 WP_007609394.1 aspartate kinase -
  QPX68_RS02030 ceuB 400249..401202 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  QPX68_RS02035 - 401192..402139 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  QPX68_RS02040 - 402133..402891 (+) 759 WP_007609404.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=839541 QPX68_RS02015 WP_003156334.1 398011..398130(+) (phrC) [Bacillus amyloliquefaciens strain GZY63]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=839541 QPX68_RS02015 WP_003156334.1 398011..398130(+) (phrC) [Bacillus amyloliquefaciens strain GZY63]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718