Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VJY30_RS09415 Genome accession   NZ_CP142035
Coordinates   1985814..1986443 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain HS4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1980814..1991443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJY30_RS09395 (VJY30_09395) ycbZ 1981204..1982964 (-) 1761 WP_000156473.1 AAA family ATPase -
  VJY30_RS09400 (VJY30_09400) matP 1983150..1983602 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  VJY30_RS09405 (VJY30_09405) ompA 1983678..1984730 (-) 1053 WP_024175778.1 porin OmpA -
  VJY30_RS09410 (VJY30_09410) sulA 1985086..1985595 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VJY30_RS09415 (VJY30_09415) sxy/tfoX 1985814..1986443 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VJY30_RS09420 (VJY30_09420) yccS 1986406..1988568 (-) 2163 WP_000875033.1 YccS family putative transporter -
  VJY30_RS09425 (VJY30_09425) yccF 1988578..1989024 (-) 447 WP_001261235.1 YccF domain-containing protein -
  VJY30_RS09430 (VJY30_09430) helD 1989147..1991201 (+) 2055 WP_012311774.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=839459 VJY30_RS09415 WP_000839153.1 1985814..1986443(+) (sxy/tfoX) [Escherichia coli strain HS4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=839459 VJY30_RS09415 WP_000839153.1 1985814..1986443(+) (sxy/tfoX) [Escherichia coli strain HS4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1