Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   VOF86_RS09340 Genome accession   NZ_CP142026
Coordinates   1991042..1991371 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain L3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1986042..1996371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOF86_RS09325 (VOF86_09325) - 1986085..1987104 (+) 1020 WP_003113413.1 MraY family glycosyltransferase -
  VOF86_RS09330 (VOF86_09330) - 1987182..1988289 (+) 1108 Protein_1851 IS3 family transposase -
  VOF86_RS09335 (VOF86_09335) - 1988854..1990851 (+) 1998 WP_010895647.1 polysaccharide biosynthesis protein -
  VOF86_RS09340 (VOF86_09340) comEA/comE1 1991042..1991371 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  VOF86_RS09350 (VOF86_09350) - 1991588..1992784 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  VOF86_RS09355 (VOF86_09355) uvrB 1992972..1994984 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=839344 VOF86_RS09340 WP_003104586.1 1991042..1991371(+) (comEA/comE1) [Pseudomonas aeruginosa strain L3]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=839344 VOF86_RS09340 WP_003104586.1 1991042..1991371(+) (comEA/comE1) [Pseudomonas aeruginosa strain L3]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385