Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QPR37_RS09215 Genome accession   NZ_CP126631
Coordinates   1841031..1841477 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 33-40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836031..1846477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR37_RS09180 (QPR37_09180) - 1836531..1836734 (+) 204 WP_000087561.1 YqgQ family protein -
  QPR37_RS09185 (QPR37_09185) - 1836731..1837717 (+) 987 WP_000161315.1 ROK family glucokinase -
  QPR37_RS09190 (QPR37_09190) - 1837717..1838046 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QPR37_RS09195 (QPR37_09195) - 1838043..1838666 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QPR37_RS09200 (QPR37_09200) comGA 1838718..1839686 (+) 969 WP_285159254.1 competence type IV pilus ATPase ComGA Machinery gene
  QPR37_RS09205 (QPR37_09205) comGB 1839658..1840728 (+) 1071 WP_109162035.1 competence type IV pilus assembly protein ComGB Machinery gene
  QPR37_RS09210 (QPR37_09210) comGC 1840742..1841053 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QPR37_RS09215 (QPR37_09215) comGD 1841031..1841477 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QPR37_RS09220 (QPR37_09220) comGE 1841464..1841763 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QPR37_RS09225 (QPR37_09225) comGF 1841681..1842178 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QPR37_RS09230 (QPR37_09230) - 1842275..1842421 (+) 147 WP_001789879.1 hypothetical protein -
  QPR37_RS09235 (QPR37_09235) - 1842411..1842935 (+) 525 WP_029549655.1 shikimate kinase -
  QPR37_RS09240 (QPR37_09240) gcvT 1843094..1844185 (+) 1092 WP_063652124.1 glycine cleavage system aminomethyltransferase GcvT -
  QPR37_RS09245 (QPR37_09245) gcvPA 1844205..1845551 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=839333 QPR37_RS09215 WP_001796473.1 1841031..1841477(+) (comGD) [Staphylococcus aureus strain 33-40]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=839333 QPR37_RS09215 WP_001796473.1 1841031..1841477(+) (comGD) [Staphylococcus aureus strain 33-40]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993