Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   DGAOKPDK_RS06635 Genome accession   NZ_CP142019
Coordinates   1398401..1400662 (-) Length   753 a.a.
NCBI ID   WP_324643048.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393401..1405662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS06625 (VOI31_RS06635) adeA 1393971..1395161 (+) 1191 WP_001169089.1 multidrug efflux RND transporter periplasmic adaptor subunit AdeA -
  DGAOKPDK_RS06630 (VOI31_RS06640) adeB 1395158..1398268 (+) 3111 WP_324643046.1 multidrug efflux RND transporter permease subunit AdeB -
  DGAOKPDK_RS06635 (VOI31_RS06645) uvrA 1398401..1400662 (-) 2262 WP_324643048.1 excinuclease ABC subunit UvrA Machinery gene
  DGAOKPDK_RS06640 (VOI31_RS06650) - 1401968..1402258 (+) 291 WP_000794351.1 hypothetical protein -
  DGAOKPDK_RS06645 (VOI31_RS06655) - 1402749..1403282 (+) 534 WP_000731819.1 fimbrial protein -
  DGAOKPDK_RS06650 (VOI31_RS06660) - 1403371..1404105 (+) 735 WP_000774086.1 molecular chaperone -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84636.97 Da        Isoelectric Point: 7.7931

>NTDB_id=839261 DGAOKPDK_RS06635 WP_324643048.1 1398401..1400662(-) (uvrA) [Acinetobacter baumannii strain EMB-1]
MTKRTINIYGARQNNLKNISLKIPKHKIVVFTGVSGSGKSSLVFETIGAEAQRQINETQDSFVRNRLQHFGVTDVDKIEN
LNVPVIINQKPLTGNIRSTVATITDIYANLRLLFSRMGEPFVGYSNVFSFNHPNGMCPQCEGIGIEQTIDIYKILDLDKS
LNEEGAIDFPTYQPTAWRWTRYADSGYFDLDKKLKDYSEKEWDLFLYAPQHKPLNPTSKWRKTALYEGLIPRFERNFLKG
EAQERNRYRNKLERIITIKECSLCKGQRLNQKSLSCKINGKNIAECTALSVSRLLEFLESIKSEKFETVLHEIKNKLNNL
NLVGLSYLNLNRVSNTLSGGESQQIKMVKHLGNSLVDLLYIFDEPSIGLHPKDLDNIIKIIQKIRDKGNSVLLVEHDPDL
IRTADHVVDMGPLSGINGGEIIYQGTFEELKNSSGLTGAFFRRPNTYKKEPRMGNEWISIKNAHLFNLKNIDVDIPKNCL
TVITGVAGSGKSTLISKVLPQQYPETKVVDQSAITASIRSNLLTYLDLLDPIRQLFAKTNKVSAKLFSFNSEGACPQCKG
SGIERVELAFLDDIEMTCDVCHGSGYAPEVLKYLYKDKNIAEILKMTVAEASNFFEDRILQQQFNSLISLGLDYIAIGQR
LNTFSGGERQRLKLTKQINETDNIFVLDEPSTGLHPSDTEKLISLLNNLVEKGNTVIVIEHNLDIISQADWIVDIGPLAG
DKGGELVFSGTVSGLLSAEKSLTGYYLKKYLEL

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=839261 DGAOKPDK_RS06635 WP_324643048.1 1398401..1400662(-) (uvrA) [Acinetobacter baumannii strain EMB-1]
ATGACTAAAAGAACAATAAATATTTATGGTGCCAGACAAAATAACCTTAAAAATATTTCATTGAAGATTCCTAAACATAA
AATCGTTGTCTTTACTGGAGTCTCTGGTTCAGGTAAATCTTCTTTAGTTTTCGAGACTATTGGCGCAGAAGCTCAAAGAC
AAATTAATGAAACTCAAGATAGTTTTGTACGTAATCGCTTGCAACATTTTGGTGTTACTGACGTTGATAAAATTGAAAAT
TTAAATGTACCTGTGATTATTAATCAAAAACCTTTAACGGGCAATATTCGCTCAACTGTTGCAACAATTACAGATATTTA
TGCCAATCTTCGCTTGTTATTTTCACGTATGGGTGAGCCGTTTGTTGGATACTCCAATGTCTTTTCTTTTAATCACCCAA
ATGGCATGTGTCCACAATGCGAAGGTATTGGAATCGAGCAAACAATTGATATTTACAAAATATTAGATTTAGATAAATCC
TTAAATGAAGAAGGTGCTATAGACTTCCCTACTTATCAACCTACAGCATGGCGTTGGACGCGATATGCAGATTCAGGTTA
CTTTGATTTAGATAAAAAATTAAAAGATTATAGTGAAAAAGAATGGGACTTATTTTTGTATGCTCCTCAGCACAAGCCTT
TAAACCCGACAAGTAAATGGAGAAAAACCGCACTTTATGAAGGACTAATTCCCAGATTTGAGCGTAACTTTTTAAAAGGT
GAAGCACAGGAAAGAAATCGTTATAGAAATAAACTTGAGCGAATTATTACAATCAAAGAATGCTCCTTATGTAAGGGACA
ACGGCTAAATCAAAAATCCTTATCTTGTAAGATTAACGGTAAAAATATTGCGGAATGTACGGCCCTATCCGTATCAAGGC
TTTTAGAGTTTCTCGAATCGATAAAAAGTGAAAAATTTGAAACCGTTTTGCACGAAATAAAAAATAAACTCAATAACTTA
AATCTCGTTGGACTCAGCTATTTAAACCTTAACCGTGTCAGCAATACATTGTCGGGAGGAGAATCACAACAAATTAAAAT
GGTTAAACATTTGGGTAATAGTCTGGTTGACCTACTCTACATTTTTGATGAACCAAGTATTGGCCTGCACCCCAAAGATT
TAGATAATATTATTAAAATTATTCAAAAAATTAGAGATAAGGGAAATAGTGTTTTATTGGTTGAGCATGATCCTGATCTT
ATTAGGACAGCTGATCATGTCGTTGATATGGGGCCTCTTTCTGGTATCAACGGCGGTGAAATTATTTACCAAGGAACTTT
TGAAGAATTAAAAAATTCATCAGGTTTAACAGGTGCGTTTTTTAGAAGGCCAAATACCTATAAGAAAGAACCACGTATGG
GCAATGAATGGATTTCAATTAAAAATGCTCATTTATTCAATTTAAAAAATATTGATGTCGATATTCCTAAGAACTGTCTA
ACCGTTATTACAGGAGTCGCTGGTTCAGGAAAAAGCACATTAATAAGTAAAGTATTACCACAACAATATCCTGAAACAAA
AGTTGTTGATCAATCTGCAATTACTGCAAGTATTCGCTCAAATTTATTGACCTATCTTGACCTTCTTGATCCGATTCGTC
AGCTATTTGCAAAAACAAATAAAGTAAGTGCCAAGCTCTTTAGTTTTAATAGTGAAGGTGCTTGCCCTCAATGTAAAGGA
TCTGGTATCGAAAGGGTTGAACTTGCATTTTTAGATGATATTGAAATGACATGTGATGTTTGTCATGGTTCTGGATATGC
ACCTGAAGTTTTAAAATATCTTTATAAAGATAAAAATATTGCTGAAATTTTAAAAATGACGGTTGCAGAAGCAAGCAACT
TTTTTGAAGATCGAATTTTACAGCAACAATTTAATTCTTTGATAAGTTTGGGGCTAGACTACATTGCAATCGGCCAACGC
TTAAATACATTTTCGGGTGGTGAGCGTCAAAGGTTAAAACTCACAAAACAAATTAATGAAACAGATAATATTTTTGTATT
GGATGAACCGAGTACAGGTCTACACCCTTCTGATACTGAAAAACTAATTAGTTTATTAAATAACTTAGTTGAGAAAGGCA
ACACAGTCATTGTGATTGAACACAACTTAGACATCATAAGTCAAGCCGACTGGATTGTTGATATTGGTCCTTTGGCGGGT
GACAAAGGTGGTGAATTGGTATTCTCAGGAACTGTTAGCGGTTTGCTTTCAGCAGAAAAATCTTTAACAGGTTATTATTT
GAAAAAATATTTAGAGCTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(468-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

34.917

100

0.361
  uvrA Streptococcus pneumoniae TIGR4

34.917

100

0.361
  uvrA Streptococcus pneumoniae D39

34.917

100

0.361