Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QPT40_RS08390 Genome accession   NZ_CP126623
Coordinates   1781344..1781958 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain C11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776344..1786958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPT40_RS08370 (QPT40_08370) - 1776711..1778471 (-) 1761 WP_032936291.1 Lon protease family protein -
  QPT40_RS08375 (QPT40_08375) matP 1778657..1779109 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  QPT40_RS08380 (QPT40_08380) ompA 1779201..1780259 (-) 1059 WP_003836839.1 porin OmpA -
  QPT40_RS08385 (QPT40_08385) sulA 1780617..1781126 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  QPT40_RS08390 (QPT40_08390) sxy/tfoX 1781344..1781958 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  QPT40_RS08395 (QPT40_08395) yccS 1781936..1784089 (-) 2154 WP_032941200.1 YccS family putative transporter -
  QPT40_RS08400 (QPT40_08400) - 1784108..1784554 (-) 447 WP_003035892.1 YccF domain-containing protein -
  QPT40_RS08405 (QPT40_08405) helD 1784680..1786734 (+) 2055 WP_343517374.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=839241 QPT40_RS08390 WP_003035889.1 1781344..1781958(+) (sxy/tfoX) [Citrobacter freundii strain C11]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=839241 QPT40_RS08390 WP_003035889.1 1781344..1781958(+) (sxy/tfoX) [Citrobacter freundii strain C11]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686