Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   VOI49_RS09550 Genome accession   NZ_CP142018
Coordinates   1893220..1893669 (-) Length   149 a.a.
NCBI ID   WP_003052921.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888220..1898669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS09530 - 1888294..1888740 (-) 447 WP_003052913.1 dUTP diphosphatase -
  VOI49_RS09535 - 1888849..1889616 (-) 768 WP_226317184.1 epoxyqueuosine reductase QueH -
  VOI49_RS09540 - 1889734..1891518 (-) 1785 WP_003052917.1 ABC transporter ATP-binding protein -
  VOI49_RS09545 rcrP 1891518..1893227 (-) 1710 WP_226317185.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS09550 rcrR 1893220..1893669 (-) 450 WP_003052921.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  VOI49_RS09555 - 1893872..1894888 (+) 1017 WP_003052923.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VOI49_RS09560 hasC 1894920..1895822 (+) 903 WP_003052925.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  VOI49_RS09565 - 1895981..1896655 (-) 675 WP_226317186.1 rhomboid family intramembrane serine protease -
  VOI49_RS09570 - 1896652..1897179 (-) 528 WP_126427648.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17414.31 Da        Isoelectric Point: 9.7963

>NTDB_id=839231 VOI49_RS09550 WP_003052921.1 1893220..1893669(-) (rcrR) [Streptococcus dysgalactiae strain lu24]
MSRVIADLRELTHQVEQISDEIAKKYNLEHLAGPQGHVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK
VLPSQVDKRYKQVILAKAGREKLPLLQECRKDIEHYFFKEITREELLTVKKVIQQLKQNMLTYKGENDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=839231 VOI49_RS09550 WP_003052921.1 1893220..1893669(-) (rcrR) [Streptococcus dysgalactiae strain lu24]
ATGTCACGAGTAATTGCGGATTTGCGTGAGTTGACACATCAGGTTGAACAAATTAGCGATGAAATTGCAAAGAAATATAA
CCTTGAACATTTAGCAGGACCCCAGGGACACGTTTTGGTTTTTCTATCCAAGCATCAAGATCAAGAAATTTTTGTGAAGG
ACATTGAAAAAGAACTCCAAATTTCAAAATCAGTTACCAGTAATCTTGTTAAACGCATGGTCAAAAATGGTTTTATTAAG
GTTCTTCCTTCCCAAGTAGATAAGCGCTACAAGCAAGTCATTTTGGCTAAGGCAGGACGGGAGAAACTGCCTTTGTTGCA
AGAATGTCGTAAGGATATTGAACATTATTTCTTTAAAGAAATCACGAGAGAGGAGTTGCTGACGGTTAAAAAGGTGATTC
AGCAGCTTAAGCAAAATATGCTAACTTACAAAGGAGAGAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

45.714

93.96

0.43