Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VOI49_RS09030 Genome accession   NZ_CP142018
Coordinates   1787081..1789906 (-) Length   941 a.a.
NCBI ID   WP_226317338.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1782081..1794906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS08995 nusB 1782370..1782819 (-) 450 WP_324738990.1 transcription antitermination factor NusB -
  VOI49_RS09000 - 1782812..1783201 (-) 390 WP_003052647.1 Asp23/Gls24 family envelope stress response protein -
  VOI49_RS09005 efp 1783247..1783804 (-) 558 WP_003052649.1 elongation factor P -
  VOI49_RS09010 - 1783892..1784359 (-) 468 WP_003052653.1 deoxycytidylate deaminase -
  VOI49_RS09015 - 1784393..1785466 (-) 1074 WP_243081327.1 M24 family metallopeptidase -
  VOI49_RS09020 - 1785835..1786293 (+) 459 WP_283265489.1 hypothetical protein -
  VOI49_RS09025 - 1786498..1786590 (+) 93 WP_264164398.1 excalibur calcium-binding domain-containing protein -
  VOI49_RS09030 uvrA 1787081..1789906 (-) 2826 WP_226317338.1 excinuclease ABC subunit UvrA Machinery gene
  VOI49_RS09035 - 1790109..1791053 (+) 945 WP_111717550.1 magnesium transporter CorA family protein -
  VOI49_RS09040 - 1791185..1791844 (+) 660 WP_324738993.1 DUF1129 domain-containing protein -
  VOI49_RS09045 rpsR 1791981..1792220 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  VOI49_RS09050 ssbA 1792338..1792829 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  VOI49_RS09055 rpsF 1792851..1793141 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  VOI49_RS09060 - 1793694..1794023 (-) 330 WP_324738995.1 hypothetical protein -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103861.03 Da        Isoelectric Point: 5.9996

>NTDB_id=839221 VOI49_RS09030 WP_226317338.1 1787081..1789906(-) (uvrA) [Streptococcus dysgalactiae strain lu24]
MQDKLIIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVEQVLALPERTRMQILAPVVRRKK
GQHKTVFEKIQKDGYVRVRVDGDIFDVTEVPELSKSKMHNIEVVIDRLVNKDGIRSRLFDSIEAALRLGDGYVVIDTMDG
SELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGIKLEVDLDLVVPDPSKTLREGALAPWNPISSNYYPTML
EQAMASFGVDMDTPFEALTEEERDLVLYGSGDREFHFHYVNDFGGERNIDIPFEGVVTNVNRRYHETNSDYTRNVMRGYM
NELTCATCHGYRLNDQALCVHVGGEEGPNIGQISELSIADHLQLLEELELTENESTIAKPIVKEIHDRLTFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLKKMRDLGNTLIVVEHDEDTMMQADWLI
DVGPGAGEFGGEIIASGTPKQVAKNKKSITGQYLSGKKFIPVPLERRSGNGRFIEIKGAAQNNLQHLDVRFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLHRNTDKPGKYQSISGIEHIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNIAEVLDMTVDDALVFF
SAIPKIARKIQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLERFVD
DGNTVLVIEHNLDVIKSADHIIDLGPEGGVGGGQIIATGTPEEVAEAKESYTGHYLKVKLL

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=839221 VOI49_RS09030 WP_226317338.1 1787081..1789906(-) (uvrA) [Streptococcus dysgalactiae strain lu24]
ATGCAAGATAAATTAATTATTCATGGGGCAAGAGCCCACAATTTAAAAAATATTGACGTGGAAATTCCACGAGACAAATT
AGTTGTCGTGACAGGGTTATCAGGTTCAGGAAAATCCAGTCTAGCCTTTGATACTATTTATGCGGAAGGGCAACGTCGTT
ACGTAGAAAGTTTATCAGCTTATGCTAGACAGTTCTTGGGTAATATGGAAAAACCAGATGTGGATTCCATTGACGGTCTT
AGCCCTGCTATTTCCATTGACCAAAAAACCACCAGTAAGAACCCCCGCTCAACGGTTGGTACGGTGACTGAAATCAATGA
TTATTTACGTCTACTATATGCGCGTGTGGGCACACCTTACTGTATCAATGGGCATGGTGCTATCACGGCGTCTTCTGTGG
AGCAAATTGTTGAACAGGTCTTGGCCCTCCCTGAACGGACTCGAATGCAGATTTTAGCTCCTGTTGTTCGTCGGAAGAAG
GGGCAACACAAAACAGTTTTTGAGAAAATTCAAAAAGATGGCTATGTCCGTGTGCGCGTTGACGGGGATATTTTTGACGT
GACAGAAGTGCCAGAGTTGTCCAAAAGTAAGATGCACAACATTGAGGTGGTTATTGACCGTCTGGTTAATAAGGATGGCA
TTCGCAGTCGATTATTTGATTCCATTGAAGCAGCTTTAAGGCTGGGAGATGGTTATGTCGTCATTGATACTATGGACGGC
AGTGAATTGCTCTTTTCTGAGCACTATTCTTGTCCTGTCTGTGGGTTTACGGTTCCTGAATTGGAGCCAAGACTCTTCTC
CTTTAATGCGCCTTTCGGTTCTTGTCCAACCTGTGATGGGCTGGGTATTAAGCTAGAAGTTGATTTGGACTTGGTTGTTC
CTGACCCAAGTAAGACGTTGAGAGAGGGAGCTTTGGCGCCTTGGAATCCTATTTCCTCCAATTATTACCCAACTATGCTT
GAGCAAGCTATGGCGAGTTTTGGGGTGGATATGGATACACCTTTTGAGGCCTTGACTGAGGAAGAAAGAGATTTAGTTCT
TTATGGTTCAGGAGACCGAGAATTTCATTTTCACTATGTGAATGATTTTGGTGGTGAGCGTAACATTGACATTCCTTTTG
AGGGTGTTGTGACCAATGTTAATCGCCGTTACCACGAAACTAATAGTGATTATACGCGCAATGTGATGCGTGGTTATATG
AACGAATTGACCTGTGCGACTTGTCATGGTTACCGTTTGAATGACCAAGCCTTGTGTGTGCATGTGGGTGGCGAAGAAGG
ACCTAATATTGGTCAAATTTCAGAATTATCTATTGCCGACCACTTGCAGTTGTTGGAAGAATTGGAACTCACAGAAAATG
AAAGTACCATTGCTAAACCGATTGTCAAAGAAATCCATGACCGTCTGACATTCTTAAATAATGTGGGACTGAATTATCTG
ACTTTGTCACGGGCTGCGGGGACTTTATCAGGTGGTGAAAGTCAACGAATCAGGTTAGCAACACAAATTGGTTCTAACCT
ATCAGGGGTGCTCTATATCTTGGATGAGCCTTCTATTGGATTGCATCAAAGAGACAATGACCGTTTGATTGAGAGCCTGA
AAAAAATGCGTGATTTGGGTAATACGTTAATTGTGGTAGAACACGATGAAGACACCATGATGCAGGCTGACTGGCTGATT
GATGTGGGGCCGGGGGCAGGTGAGTTCGGGGGAGAAATTATTGCCTCTGGAACGCCGAAACAAGTGGCTAAGAATAAAAA
ATCCATCACGGGTCAATATTTGTCTGGTAAAAAATTCATTCCAGTGCCTTTAGAGCGCCGTTCTGGTAATGGCCGATTCA
TTGAAATAAAAGGAGCAGCACAAAACAATCTTCAACACCTTGATGTTAGATTCCCTCTCGGCAAATTTATTGCTGTTACA
GGGGTATCGGGTTCTGGTAAGTCTACCTTGGTTAATAGTATTTTGAAAAAGGCTGTCGCTCAGAAACTTCATCGGAATAC
CGACAAGCCTGGGAAGTATCAGTCTATTTCTGGTATTGAACATATTGAACGGTTGATTGACATCGATCAAAGTCCGATTG
GGAGGACGCCGCGCTCAAATCCAGCAACTTATACTGGGGTCTTTGATGATATTCGAGACTTGTTTGCCCAAACCAACGAA
GCTAAGATTCGTGGCTACAAAAAAGGACGTTTCTCTTTTAATGTCAAGGGTGGGCGTTGTGAGGCTTGTTCAGGTGATGG
GATTATCAAAATTGAAATGCACTTTTTGCCAGATGTTTATGTGCCATGTGAGGTTTGCCACGGCAGACGGTATAACTCTG
AAACACTTGAAGTGCATTACAAAGGAAAAAATATCGCAGAAGTCCTTGATATGACTGTGGATGATGCCTTGGTATTCTTC
TCTGCTATTCCTAAAATCGCTCGAAAAATTCAAACGATTAAGGATGTTGGACTTGGTTATGTGACCTTGGGTCAACCAGC
TACCACCCTCTCTGGGGGAGAAGCTCAACGGATGAAGTTGGCTAGTGAATTGCACAAGCGGTCGACAGGAAAGAGTCTGT
ATATTTTGGACGAACCAACGACTGGCTTACATACAGATGATATCGCAAGGCTTTTGAAGGTATTAGAACGCTTTGTAGAC
GATGGCAATACGGTTCTTGTGATTGAGCATAACTTGGATGTTATTAAGTCTGCTGACCATATCATTGACTTAGGGCCAGA
AGGCGGTGTTGGTGGAGGTCAGATTATTGCGACGGGGACACCAGAAGAGGTTGCTGAAGCCAAAGAAAGTTATACTGGTC
ATTATTTGAAAGTCAAATTATTATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85.638

99.894

0.855
  uvrA Streptococcus pneumoniae TIGR4

85.638

99.894

0.855
  uvrA Streptococcus pneumoniae D39

85.638

99.894

0.855